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SCNpilot_expt_500_bf_scaffold_103_curated

Search features with annotation key words

Displaying items 1-30 of 309 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_103_curated_1
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(307..924)
DNA (618bp) protein (206aa)
Uncharacterized protein {ECO:0000313|EMBL:AIE84240.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SCNpilot_expt_500_bf_scaffold_103_curated_2
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

1038..3611
DNA (2574bp) protein (858aa)
ATP-dependent nuclease, subunit B {ECO:0000313|EMBL:AIE84241.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SCNpilot_expt_500_bf_scaffold_103_curated_3
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

3608..3793
DNA (186bp) protein (62aa)
ATP-dependent nuclease, subunit B {ECO:0000313|EMBL:AIE84241.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SCNpilot_expt_500_bf_scaffold_103_curated_4
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

3783..6104
DNA (2322bp) protein (774aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
exodeoxyribonuclease V (EC:3.1.11.5)
Exodeoxyribonuclease V n=1 Tax=Acidaminococcus fermentans (strain ATCC 25085 / DSM 20731 / VR4) RepID=D2RKU1_ACIFV
SCNpilot_expt_500_bf_scaffold_103_curated_5
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

6118..6981
DNA (864bp) protein (288aa)
Predicted amidohydrolase (EC:3.5.1.6)
Predicted amidohydrolase n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EZC3_9BACT
Beta-ureidopropionase {ECO:0000313|EMBL:AIE84032.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SCNpilot_expt_500_bf_scaffold_103_curated_6
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(7024..7794)
DNA (771bp) protein (257aa)
glycerophosphoryl diester phosphodiesterase; K01126 glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
Glycerophosphoryl diester phosphodiesterase n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JHY9_CELLD
Glycerophosphoryl diester phosphodiesterase {ECO:0000313|EMBL:AIE86251.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SCNpilot_expt_500_bf_scaffold_103_curated_7
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(7794..8621)
DNA (828bp) protein (276aa)
Prepilin-type N-terminal cleavage/methylation domain n=1 Tax=Chthonomonas calidirosea T49 RepID=S0ESR3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AIE83745.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
prepilin-type N-terminal cleavage/methylation domain
SCNpilot_expt_500_bf_scaffold_103_curated_8
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(8990..10786)
DNA (1797bp) protein (599aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
Elongation factor 4 n=1 Tax=Chthonomonas calidirosea T49 RepID=S0ET12_9BACT
GTP-binding protein LepA
SCNpilot_expt_500_bf_scaffold_103_curated_9
unknown

Not on your lists

comp(10931..11605)
DNA (675bp) protein (225aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_103_curated_10
Kineococcus radiotolerans, Kineococcus, Kineosporiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11695..14451)
DNA (2757bp) protein (919aa)
Transcriptional regulator, winged helix family n=1 Tax=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) RepID=A6WDV2_KINRD
winged helix family transcriptional regulator
Transcriptional regulator, winged helix family {ECO:0000313|EMBL:ABS04991.1}; TaxID=266940 species="Bacteria; Actinobacteria; Kineosporiales; Kineosporiaceae; Kineococcus.;" source="Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 /; SRS30216).;"
SCNpilot_expt_500_bf_scaffold_103_curated_11
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(14500..15351)
DNA (852bp) protein (284aa)
peptidyl-arginine deiminase/hydrolase fusion protein; K10536 agmatine deiminase [EC:3.5.3.12]
Beta-alanine synthetase {ECO:0000313|EMBL:AIE85718.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
Putative nitrilase/cyanide hydratase family protein id=3995252 bin=GWF2_Lentisphaerae_49_21 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
SCNpilot_expt_500_bf_scaffold_103_curated_12
unknown

Not on your lists

comp(15421..16341)
DNA (921bp) protein (307aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_103_curated_13
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(16376..17377)
DNA (1002bp) protein (334aa)
Aldo/keto reductase n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LJ26_HALO1
Aldo-keto reductase {ECO:0000313|EMBL:AIE86246.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
aldo/keto reductase
SCNpilot_expt_500_bf_scaffold_103_curated_14
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(17423..18373)
DNA (951bp) protein (317aa)
Aldo/keto reductase n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LJ26_HALO1
Aldo-keto reductase {ECO:0000313|EMBL:AIE86246.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
aldo/keto reductase
SCNpilot_expt_500_bf_scaffold_103_curated_15
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(18424..18852)
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Nocardia sp. BMG111209 RepID=UPI000361D771
Transcriptional regulator, MerR family {ECO:0000313|EMBL:AIE86245.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
transcriptional regulator, MerR family
SCNpilot_expt_500_bf_scaffold_103_curated_16
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

19051..19932
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Armatimonadetes bacterium JGI 0000077-K19 RepID=UPI0003B34BBC
Uncharacterized protein {ECO:0000313|EMBL:AIE84859.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
prepilin-type N-terminal cleavage/methylation domain
SCNpilot_expt_500_bf_scaffold_103_curated_17
unknown

Not on your lists

19995..20234
DNA (240bp) protein (80aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_103_curated_18
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

20319..20900
DNA (582bp) protein (194aa)
heme exporter protein CcmA; K02193 heme exporter protein A [EC:3.6.3.41]
Heme exporter protein CcmA {ECO:0000313|EMBL:AIE85876.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
ABC transporter related protein id=1249982 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
SCNpilot_expt_500_bf_scaffold_103_curated_19
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

20897..21568
DNA (672bp) protein (224aa)
Cytochrome c-type biogenesis protein CcmB n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NSA6_ROSCS
ABC transporter involved in cytochrome c biogenesis, CcmB subunit {ECO:0000313|EMBL:AIE85877.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
cytochrome c-type biogenesis protein CcmB; K02194 heme exporter protein B
SCNpilot_expt_500_bf_scaffold_103_curated_20
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

21565..22311
DNA (747bp) protein (249aa)
Cytochrome c assembly protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GG64_9FIRM
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE {ECO:0000313|EMBL:AIE85878.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
ABC-type transport system involved in cytochrome c biogenesis, permease component
SCNpilot_expt_500_bf_scaffold_103_curated_21
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

22373..23125
DNA (753bp) protein (251aa)
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EU92_9BACT
SAM dependent methyltransferase {ECO:0000313|EMBL:AIE85879.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
Methylase involved in ubiquinone/menaquinone biosynthesis
SCNpilot_expt_500_bf_scaffold_103_curated_22
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(23128..24297)
DNA (1170bp) protein (390aa)
Peptidase, S41 family n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WT54_9SYNE
Putative exported carboxyl-terminal protease protein {ECO:0000313|EMBL:AIE85874.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
peptidase S41
SCNpilot_expt_500_bf_scaffold_103_curated_23
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists


24394..25122
DNA (729bp) protein (243aa)
50S ribosomal protein L1 n=14 Tax=Bacillus RepID=RL1_BACSU
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
rplA; ribosomal protein L1
SCNpilot_expt_500_bf_scaffold_103_curated_24
Marivirga tractuosa, Marivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(25229..25591)
DNA (363bp) protein (121aa)
Cupin 2 conserved barrel domain protein n=1 Tax=Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB 1408 / VKM B-1430 / H-43) RepID=E4TUV7_MARTH
hypothetical protein
Cupin 2 conserved barrel domain protein {ECO:0000313|EMBL:ADR21062.1}; TaxID=643867 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Marivirga.;" source="Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB; 1408 / VKM B-1430 / H-43) (Microscilla tractuosa) (Flexibacter; tractuosus).;"
SCNpilot_expt_500_bf_scaffold_103_curated_25
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(25595..25984)
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Amycolatopsis nigrescens RepID=UPI00035E9CDF
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:AIE85870.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
glyoxalase/bleomycin resistance protein/dioxygenase
SCNpilot_expt_500_bf_scaffold_103_curated_26
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

26124..27488
DNA (1365bp) protein (455aa)
tnaA; tryptophanase; K01667 tryptophanase [EC:4.1.99.1]
Tryptophanase n=1 Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AMW4_IGNAJ
Tax=RBG_16_Ignavibacteria_34_14_curated
SCNpilot_expt_500_bf_scaffold_103_curated_27
Gimesia maris, Gimesia, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(27544..28410)
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C3B6_9PLAN
Uncharacterized protein {ECO:0000313|EMBL:EDL60711.1}; TaxID=344747 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
putative S12 family peptidase
SCNpilot_expt_500_bf_scaffold_103_curated_28
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(28564..29331)
DNA (768bp) protein (256aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V668_TERSS
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADV84959.1}; TaxID=401053 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4).;"
SCNpilot_expt_500_bf_scaffold_103_curated_29
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

29463..30362
DNA (900bp) protein (300aa)
Transcriptional regulator, AraC family n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V669_TERSS
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ADV84960.1}; TaxID=401053 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4).;"
SCNpilot_expt_500_bf_scaffold_103_curated_30
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(30401..31267)
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Nostoc sp. (strain ATCC 29411 / PCC 7524) RepID=K9QQC1_NOSS7
Uncharacterized protein {ECO:0000313|EMBL:AIE86414.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
hypothetical protein
Displaying items 1-30 of 309 in total

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