ggKbase home page

SCNpilot_expt_500_bf_scaffold_229_curated

Search features with annotation key words

Displaying items 1-30 of 114 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_229_curated_1
unknown

Not on your lists

comp(117..896)
DNA (780bp) protein (260aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_229_curated_2
unknown

Not on your lists

comp(899..2848)
DNA (1950bp) protein (650aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_229_curated_3
unknown

Not on your lists

comp(2958..3278)
DNA (321bp) protein (107aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_229_curated_4
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3400..3657
DNA (258bp) protein (86aa)
Helix-hairpin-helix DNA-binding motif-containing protein n=1 Tax=Pseudomonas putida CSV86 RepID=L1LXC4_PSEPU
Helix-hairpin-helix DNA-binding motif-containing protein {ECO:0000313|EMBL:EKX83470.1}; TaxID=1005395 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida CSV86.;"
SCNpilot_expt_500_bf_scaffold_229_curated_5
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(4027..6513)
DNA (2487bp) protein (829aa)
Uncharacterized protein {ECO:0000313|EMBL:AIE86774.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SCNpilot_expt_500_bf_scaffold_229_curated_6
BJP_IG2158_Thermoplasmatales_53_16, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

comp(6741..8012)
DNA (1272bp) protein (424aa)
argD; acetylornithine aminotransferase ArgD (EC:2.6.1.11); K00819 ornithine--oxo-acid transaminase [EC:2.6.1.13]
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI000365E1D2
Tax=BJP_IG2158_Thermoplasmatales_53_16
SCNpilot_expt_500_bf_scaffold_229_curated_7
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(8055..8633)
DNA (579bp) protein (193aa)
Prepilin-type N-terminal cleavage/methylation domain n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EV89_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AIE88138.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
prepilin-type N-terminal cleavage/methylation domain
SCNpilot_expt_500_bf_scaffold_229_curated_8
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(8643..9362)
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=unclassified candidate division EM 19 RepID=UPI0003828626
Response regulator receiver protein {ECO:0000313|EMBL:AIE86392.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
two component LuxR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_229_curated_9
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

9380..9913
DNA (534bp) protein (178aa)
ABC-type dipeptide/oligopeptide/nickel transporter, ATPase component n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5Y7H3_PARAH
Oligopeptide/dipeptide ABC transporter ATPase {ECO:0000313|EMBL:AIE83480.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
ABC-type dipeptide/oligopeptide/nickel transporter, ATPase component
SCNpilot_expt_500_bf_scaffold_229_curated_10
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

9949..10311
DNA (363bp) protein (121aa)
Oligopeptide ABC transporter ATP-binding protein n=1 Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NDV9_GLOVI
Oligopeptide/dipeptide ABC transporter ATPase {ECO:0000313|EMBL:AIE83480.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
oligopeptide ABC transporter ATP-binding protein; K02031 peptide/nickel transport system ATP-binding protein
SCNpilot_expt_500_bf_scaffold_229_curated_11
Peptococcaceae bacterium BRH_c4a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10282..11823)
DNA (1542bp) protein (514aa)
Uncharacterized protein n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M4L9_GEODF
DNA polymerase V {ECO:0000313|EMBL:KJS03807.1}; TaxID=1629716 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c4a.;"
hypothetical protein; K09760 DNA recombination protein RmuC
SCNpilot_expt_500_bf_scaffold_229_curated_12
unknown

Not on your lists

comp(11856..12119)
DNA (264bp) protein (88aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_229_curated_13
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

12338..13216
DNA (879bp) protein (293aa)
Methylisocitrate lyase {ECO:0000256|RuleBase:RU361121}; EC=4.1.3.30 {ECO:0000256|RuleBase:RU361121};; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
methylisocitrate lyase (EC:2.7.8.23)
Methylisocitrate lyase n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EVQ0_9BACT
SCNpilot_expt_500_bf_scaffold_229_curated_14
Herpetosiphon aurantiacus, Herpetosiphon, Herpetosiphonales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(14204..15055)
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9AY47_HERA2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX06929.1}; TaxID=316274 species="Bacteria; Chloroflexi; Chloroflexia; Herpetosiphonales; Herpetosiphonaceae; Herpetosiphon.;" source="Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785).;"
SCNpilot_expt_500_bf_scaffold_229_curated_15
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

15205..16356
DNA (1152bp) protein (384aa)
citrate synthase (EC:2.3.3.1); K01647 citrate synthase [EC:2.3.3.1]
Citrate synthase n=1 Tax=Alicyclobacillus acidoterrestris ATCC 49025 RepID=T0D0N1_9BACL
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SCNpilot_expt_500_bf_scaffold_229_curated_16
unknown

Not on your lists

16448..17125
DNA (678bp) protein (226aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_229_curated_17
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(17122..18258)
DNA (1137bp) protein (379aa)
putative S-layer associated protein n=1 Tax=Paenibacillus elgii RepID=UPI000248C23D
Putative S-layer associated protein {ECO:0000313|EMBL:AIE87200.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
S-layer associated protein
SCNpilot_expt_500_bf_scaffold_229_curated_18
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

18461..20248
DNA (1788bp) protein (596aa)
Serine/threonine protein kinase (EC:2.7.11.1)
Serine/threonine protein kinase n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EY51_9BACT
Putative calcium/calmodulin-dependent protein kinase {ECO:0000313|EMBL:AIE86898.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SCNpilot_expt_500_bf_scaffold_229_curated_19
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(20245..21024)
DNA (780bp) protein (260aa)
short-chain dehydrogenase/reductase SDR; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
hypothetical protein n=1 Tax=Armatimonadetes bacterium JGI 0000077-K19 RepID=UPI0003B4B728
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:AIE86899.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SCNpilot_expt_500_bf_scaffold_229_curated_20
unknown

Not on your lists

comp(21183..21509)
DNA (327bp) protein (109aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_229_curated_21
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(21668..23113)
DNA (1446bp) protein (482aa)
lnt; apolipoprotein N-acyltransferase; K03820 apolipoprotein N-acyltransferase [EC:2.3.1.-] id=14631871 bin=bin9_gal15 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin9_gal15 organism_group=GAL15
apolipoprotein N-acyltransferase; K03820 apolipoprotein N-acyltransferase [EC:2.3.1.-]
Apolipoprotein N-acyltransferase {ECO:0000313|EMBL:AIE83462.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SCNpilot_expt_500_bf_scaffold_229_curated_22
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(23097..23738)
DNA (642bp) protein (214aa)
Phosphoglycerate mutase; K15634 probable phosphoglycerate mutase [EC:5.4.2.1]
Phosphoglycerate mutase family protein n=1 Tax=Peptostreptococcus anaerobius 653-L RepID=D3MTR9_9FIRM
Putative alpha-ribazole phosphatase {ECO:0000313|EMBL:AIE83461.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SCNpilot_expt_500_bf_scaffold_229_curated_23
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(23747..24664)
DNA (918bp) protein (306aa)
Uncharacterized protein {ECO:0000313|EMBL:AIE83460.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SCNpilot_expt_500_bf_scaffold_229_curated_24
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(24796..25665)
DNA (870bp) protein (290aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SCNpilot_expt_500_bf_scaffold_229_curated_25
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(25691..26803)
DNA (1113bp) protein (371aa)
putative oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22)
Putative oxygen-independent coproporphyrinogen III oxidase n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EZI4_9BACT
Oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:AIE84418.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SCNpilot_expt_500_bf_scaffold_229_curated_26
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(26999..27742)
DNA (744bp) protein (248aa)
Uncharacterized protein {ECO:0000313|EMBL:AIE84781.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SCNpilot_expt_500_bf_scaffold_229_curated_27
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(27764..28636)
DNA (873bp) protein (291aa)
Uncharacterized protein {ECO:0000313|EMBL:AIE84782.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SCNpilot_expt_500_bf_scaffold_229_curated_28
unknown

Not on your lists

29101..29322
DNA (222bp) protein (74aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_229_curated_29
unknown

Not on your lists

comp(30169..31005)
DNA (837bp) protein (279aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_229_curated_30
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists


comp(31145..33142)
DNA (1998bp) protein (666aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
arginyl-tRNA synthetase (EC:6.1.1.19); K01887 arginyl-tRNA synthetase [EC:6.1.1.19]
Arginine--tRNA ligase n=1 Tax=Sutterella sp. CAG:351 RepID=R7IFJ9_9BURK
Displaying items 1-30 of 114 in total

View Taxonomy