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SCNpilot_expt_500_bf_scaffold_116_curated

Search features with annotation key words

Displaying items 1-30 of 319 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_116_curated_1
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(316..843)
DNA (528bp) protein (176aa)
Peptide methionine sulfoxide reductase MsrB {ECO:0000256|HAMAP-Rule:MF_01400}; EC=1.8.4.12 {ECO:0000256|HAMAP-Rule:MF_01400};; Peptide-methionine (R)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01400}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
methionine-R-sulfoxide reductase (EC:1.8.4.12); K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
Peptide methionine sulfoxide reductase MsrB n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSE0_9BACT
SCNpilot_expt_500_bf_scaffold_116_curated_2
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(894..2867)
DNA (1974bp) protein (658aa)
hypothetical protein n=1 Tax=unclassified candidate division EM 19 RepID=UPI00036EFC88
Uncharacterized protein {ECO:0000313|EMBL:AIE84452.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_116_curated_3
unknown

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3025..4338
DNA (1314bp) protein (438aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_116_curated_4
unknown

Not on your lists

4301..4669
DNA (369bp) protein (123aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_116_curated_5
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(4653..5774)
DNA (1122bp) protein (374aa)
Uncharacterized protein n=1 Tax=Chthonomonas calidirosea T49 RepID=S0ESI8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AIE86438.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_116_curated_6
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(5781..6764)
DNA (984bp) protein (328aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
thioredoxin reductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9]
Thioredoxin reductase n=1 Tax=Cecembia lonarensis LW9 RepID=K1KWH1_9BACT
SCNpilot_expt_500_bf_scaffold_116_curated_7
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

6871..7179
DNA (309bp) protein (103aa)
Uncharacterized protein {ECO:0000313|EMBL:AIE83468.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SCNpilot_expt_500_bf_scaffold_116_curated_8
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

7176..7682
DNA (507bp) protein (169aa)
Uncharacterized protein {ECO:0000313|EMBL:AIE83467.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SCNpilot_expt_500_bf_scaffold_116_curated_9
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

7686..8627
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=Meiothermus timidus RepID=UPI00035D4FA9
Putative acetyltransferase {ECO:0000313|EMBL:AIE83466.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
N-acetyltransferase GCN5
SCNpilot_expt_500_bf_scaffold_116_curated_10
Chthonomonas calidirosea, Chthonomonas, Chthonomonadales, Chthonomonadetes, Armatimonadetes, Bacteria

Not on your lists

8704..9465
DNA (762bp) protein (254aa)
Ferritin-like domain n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EW93_9BACT
Ferritin-like domain
Ferritin-like domain {ECO:0000313|EMBL:CCW36148.1}; TaxID=1303518 species="Bacteria; Armatimonadetes; Chthonomonadetes; Chthonomonadales; Chthonomonadaceae; Chthonomonas.;" source="Chthonomonas calidirosea (strain DSM 23976 / ICMP 18418 / T49).;"
SCNpilot_expt_500_bf_scaffold_116_curated_11
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

9525..11156
DNA (1632bp) protein (544aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
Sensor protein n=2 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FT15_STIAD
sensor protein
SCNpilot_expt_500_bf_scaffold_116_curated_12
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

11134..11823
DNA (690bp) protein (230aa)
hypothetical protein n=1 Tax=Desulfurispora thermophila RepID=UPI00036ECABA
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:AIE85353.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
SCNpilot_expt_500_bf_scaffold_116_curated_13
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(11820..12539)
DNA (720bp) protein (240aa)
Metallopeptidase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMX5_9BACT
Metallopeptidase {ECO:0000313|EMBL:EEF58771.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_116_curated_14
unknown

Not on your lists

comp(12685..13266)
DNA (582bp) protein (194aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_116_curated_15
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(13256..13843)
DNA (588bp) protein (196aa)
Uncharacterized protein {ECO:0000313|EMBL:AIE87761.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SCNpilot_expt_500_bf_scaffold_116_curated_16
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(14619..15767)
DNA (1149bp) protein (383aa)
Vitamin K epoxide reductase n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CCX5_THET1
Protein-disulfide isomerase {ECO:0000313|EMBL:AIE87431.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
vitamin K epoxide reductase
SCNpilot_expt_500_bf_scaffold_116_curated_17
unknown

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comp(15718..16731)
DNA (1014bp) protein (338aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_116_curated_18
unknown

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comp(16728..17825)
DNA (1098bp) protein (366aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_116_curated_19
unknown

Not on your lists

comp(17837..18250)
DNA (414bp) protein (138aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_116_curated_20
Pirellula staleyi, Pirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(18304..18795)
DNA (492bp) protein (164aa)
threonine dehydratase; K01754 threonine dehydratase [EC:4.3.1.19]
Threonine dehydratase n=1 Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2R9E9_PIRSD
Threonine dehydratase {ECO:0000313|EMBL:ADB17699.1}; TaxID=530564 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
SCNpilot_expt_500_bf_scaffold_116_curated_21
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(19007..20212)
DNA (1206bp) protein (402aa)
threonine dehydratase catabolic, putative; K01754 threonine dehydratase [EC:4.3.1.19]
threonine dehydratase n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017462FD
Threonine dehydratase {ECO:0000313|EMBL:AIE87416.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SCNpilot_expt_500_bf_scaffold_116_curated_22
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

20291..21145
DNA (855bp) protein (285aa)
Uncharacterized protein {ECO:0000313|EMBL:AIE86188.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
SCNpilot_expt_500_bf_scaffold_116_curated_23
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

21158..22000
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Bdellovibrio bacteriovorus str. Tiberius RepID=K7ZFD7_BDEBC
Formamidopyrimidine-DNA glycosylase {ECO:0000313|EMBL:AIE87485.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
fpg; hypothetical protein
SCNpilot_expt_500_bf_scaffold_116_curated_24
unknown

Not on your lists

comp(21997..22611)
DNA (615bp) protein (205aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_116_curated_25
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22657..24891)
DNA (2235bp) protein (745aa)
peptidase S9 n=1 Tax=Cytophagales str. B6 RepID=UPI0003B5A44D
Peptidase S9 {ECO:0000313|EMBL:KIA96924.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
peptidase S9 prolyl oligopeptidase active site domain-containing protein
SCNpilot_expt_500_bf_scaffold_116_curated_26
unknown

Not on your lists

comp(24960..26531)
DNA (1572bp) protein (524aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_116_curated_27
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

26581..28020
DNA (1440bp) protein (480aa)
Sulfatase n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VYN4_DYAFD
sulfatase
Sulfatase {ECO:0000313|EMBL:ACT93389.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_expt_500_bf_scaffold_116_curated_28
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

28069..28884
DNA (816bp) protein (272aa)
Thioredoxin family protein {ECO:0000313|EMBL:AIE83639.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
Uncharacterized protein id=3257613 bin=GWF2_Ignavibacteria_33_9 species=Riemerella anatipestifer genus=Riemerella taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Ignavibacteria_33_9 organism_group=Ignavibacteria
alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
SCNpilot_expt_500_bf_scaffold_116_curated_29
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(28920..31565)
DNA (2646bp) protein (882aa)
Putative dipeptidyl peptidase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAI1_GEMAT
Putative dipeptidyl peptidase {ECO:0000313|EMBL:AIE84035.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
putative dipeptidyl peptidase
SCNpilot_expt_500_bf_scaffold_116_curated_30
R_Gallionellales_57_47, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31653..32267)
DNA (615bp) protein (205aa)
rutE; oxidoreductase subunit of the alteRNAtive pyrimidine degradation pathway; K09019 3-hydroxypropanoate dehydrogenase [EC:1.1.1.-]
Putative NADH dehydrogenase/NAD(P)H nitroreductase C404_15440 n=1 Tax=Ralstonia sp. AU12-08 RepID=S9TES4_9RALS
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
Displaying items 1-30 of 319 in total

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