ggKbase home page

SCNpilot_expt_500_bf_scaffold_468_curated

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_468_curated_1
Leptolyngbya sp. Heron Island J, Leptolyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(3..2288)
DNA (2286bp) protein (762aa)
Conjugal transfer n=1 Tax=Leptolyngbya sp. Heron Island J RepID=U9W0M1_9CYAN
Conjugal transfer {ECO:0000313|EMBL:ESA36548.1}; TaxID=1385935 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Leptolyngbya.;" source="Leptolyngbya sp. Heron Island J.;"
putative ATP-dependent exoDNAse (exonuclease V) subunit alpha
SCNpilot_expt_500_bf_scaffold_468_curated_2
unknown

Not on your lists

comp(2290..2772)
DNA (483bp) protein (161aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_468_curated_3
Gloeobacter kilaueensis, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

comp(2868..3377)
DNA (510bp) protein (170aa)
GCN5-related N-acetyltransferase n=1 Tax=Gloeobacter kilaueensis JS1 RepID=U5QK21_9CYAN
GCN5-related N-acetyltransferase
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:AGY58020.1}; TaxID=1183438 species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter kilaueensis JS1.;"
SCNpilot_expt_500_bf_scaffold_468_curated_4

Not on your lists

comp(3374..3649)
DNA (276bp) protein (92aa)
Protein containing DUF1778 n=1 Tax=mine drainage metagenome RepID=T1AKU7_9ZZZZ
Protein containing DUF1778 {ECO:0000313|EMBL:EQD42655.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_468_curated_5
unknown

Not on your lists

comp(3745..4260)
DNA (516bp) protein (172aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_468_curated_6
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4534..6078)
DNA (1545bp) protein (515aa)
TraG/TraD family protein n=2 Tax=Clostridium botulinum F RepID=A7GI48_CLOBL
TraG/TraD family protein; K03205 type IV secretion system protein VirD4
TraG/TraD family protein {ECO:0000313|EMBL:ABS40697.1}; TaxID=441772 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Langeland / NCTC 10281 / Type F).;"
SCNpilot_expt_500_bf_scaffold_468_curated_7
unknown

Not on your lists

comp(6085..6732)
DNA (648bp) protein (216aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_468_curated_8
unknown

Not on your lists

comp(6852..7238)
DNA (387bp) protein (129aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_468_curated_9

Not on your lists

comp(7655..8944)
DNA (1290bp) protein (430aa)
Uncharacterized protein n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CIZ9_THET1
Marine sediment metagenome DNA, contig: S03H2_S07801 {ECO:0000313|EMBL:GAH48018.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_468_curated_10
unknown

Not on your lists

comp(8941..9429)
DNA (489bp) protein (163aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_468_curated_11
Prauserella sp. Am3, Prauserella, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9429..10421)
DNA (993bp) protein (331aa)
ATPase involved in chromosome partitioning n=1 Tax=Saccharomonospora glauca K62 RepID=I1D460_9PSEU
ATPase involved in chromosome partitioning {ECO:0000313|EMBL:KID28312.1}; TaxID=1515610 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Prauserella.;" source="Prauserella sp. Am3.;"
cobyrinic acid ac-diamide synthase; K03496 chromosome partitioning protein
SCNpilot_expt_500_bf_scaffold_468_curated_12
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10804..11493)
DNA (690bp) protein (230aa)
Putative uncharacterized protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G922_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ28290.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
SCNpilot_expt_500_bf_scaffold_468_curated_13
Natranaerobius thermophilus, Natranaerobius, Natranaerobiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11674..12711)
DNA (1038bp) protein (346aa)
Site-specific recombinase XerD n=1 Tax=Burkholderia sp. Ch1-1 RepID=I2IN21_9BURK
Tyrosine recombinase XerD {ECO:0000256|HAMAP-Rule:MF_01807}; TaxID=457570 species="Bacteria; Firmicutes; Clostridia; Natranaerobiales; Natranaerobiaceae; Natranaerobius.;" source="Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 /; JW/NM-WN-LF).;"
Phage integrase/recombinase family protein
SCNpilot_expt_500_bf_scaffold_468_curated_14
Elizabethkingia anophelis, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

12928..13692
DNA (765bp) protein (255aa)
HNH endonuclease domain protein n=1 Tax=Leptospira noguchii serovar Panama str. CZ214 RepID=T0GTP8_9LEPT
Putative HNH endonuclease domain protein {ECO:0000313|EMBL:CDN74947.1}; TaxID=1117645 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia anophelis.;"
SCNpilot_expt_500_bf_scaffold_468_curated_15
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(13765..14217)
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Armatimonadetes bacterium JGI 0000077-K19 RepID=UPI0003B4310F
Uncharacterized protein {ECO:0000313|EMBL:AHG88882.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_468_curated_16
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(14273..15709)
DNA (1437bp) protein (479aa)
Mercuric reductase {ECO:0000313|EMBL:CDM66547.1}; EC=1.16.1.1 {ECO:0000313|EMBL:CDM66547.1};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
mercuric reductase (EC:1.16.1.1)
Mercuric reductase n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EU12_9BACT
SCNpilot_expt_500_bf_scaffold_468_curated_17
Chthonomonas calidirosea, Chthonomonas, Chthonomonadales, Chthonomonadetes, Armatimonadetes, Bacteria

Not on your lists

15850..16245
DNA (396bp) protein (132aa)
Transcriptional regulator, ArsR family n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EUN1_9BACT
transcriptional regulator, ArsR family
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:CCW35068.1}; TaxID=1303518 species="Bacteria; Armatimonadetes; Chthonomonadetes; Chthonomonadales; Chthonomonadaceae; Chthonomonas.;" source="Chthonomonas calidirosea (strain DSM 23976 / ICMP 18418 / T49).;"
SCNpilot_expt_500_bf_scaffold_468_curated_18
CG_Arma_02, Armatimonadetes, Bacteria

Not on your lists

16242..16820
DNA (579bp) protein (193aa)
Heavy metal transport/detoxification protein n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LPJ8_HALO1
heavy metal transport/detoxification protein
Tax=CG_Arma_02
SCNpilot_expt_500_bf_scaffold_468_curated_19
GWC2_Deltaproteobacteria_65_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16817..17137
DNA (321bp) protein (107aa)
Uncharacterized protein id=3552014 bin=GWC2_Proteo_65_14_Ab886 species=Terriglobus roseus genus=Terriglobus taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
alkylmercury lyase
Tax=GWC2_Deltaproteobacteria_65_14_curated
SCNpilot_expt_500_bf_scaffold_468_curated_20

Not on your lists

comp(17168..18373)
DNA (1206bp) protein (402aa)
Major facilitator superfamily MFS_1 n=1 Tax=mine drainage metagenome RepID=E6QMN0_9ZZZZ
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:CBI08501.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
major facilitator superfamily (MFS_1) protein
SCNpilot_expt_500_bf_scaffold_468_curated_21
Belliella baltica, Belliella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(18388..20784)
DNA (2397bp) protein (799aa)
Copper/silver-translocating P-type ATPase n=1 Tax=Belliella baltica (strain DSM 15883 / CIP 108006 / LMG 21964 / BA134) RepID=I3Z802_BELBD
copper/silver-translocating P-type ATPase
Copper/silver-translocating P-type ATPase {ECO:0000313|EMBL:AFL85370.1}; TaxID=866536 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Belliella.;" source="Belliella baltica (strain DSM 15883 / CIP 108006 / LMG 21964 / BA134).;"
SCNpilot_expt_500_bf_scaffold_468_curated_22
Belliella baltica, Belliella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(20787..21482)
DNA (696bp) protein (232aa)
thiol:disulfide interchange protein id=12556459 bin=CNBR_ACIDO species=Nafulsella turpanensis genus=Nafulsella taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
thiol:disulfide interchange protein
Thiol:disulfide interchange protein {ECO:0000313|EMBL:AFL85372.1}; TaxID=866536 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Belliella.;" source="Belliella baltica (strain DSM 15883 / CIP 108006 / LMG 21964 / BA134).;"
SCNpilot_expt_500_bf_scaffold_468_curated_23
Belliella baltica, Belliella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(21479..21892)
DNA (414bp) protein (138aa)
Copper chaperone n=1 Tax=Belliella baltica (strain DSM 15883 / CIP 108006 / LMG 21964 / BA134) RepID=I3Z803_BELBD
copper chaperone
Copper chaperone {ECO:0000313|EMBL:AFL85371.1}; Flags: Precursor;; TaxID=866536 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Belliella.;" source="Belliella baltica (strain DSM 15883 / CIP 108006 / LMG 21964 / BA134).;"
SCNpilot_expt_500_bf_scaffold_468_curated_24
R_Elusimicrobia_57_9, Elusimicrobia, Bacteria

Not on your lists

comp(21929..22207)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Oscillatoria nigro-viridis PCC 7112 RepID=K9VR60_9CYAN
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Elusimicrobia_57_9_curated
SCNpilot_expt_500_bf_scaffold_468_curated_25
Acinetobacter rudis, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22204..22662)
DNA (459bp) protein (153aa)
MerR family transcriptional regulator n=1 Tax=Schlesneria paludicola RepID=UPI00029A336B
Cd(II)/Pb(II)-responsive transcriptional regulator {ECO:0000313|EMBL:EPF81587.1}; TaxID=421052 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobacter rudis CIP 110305.;"
MerR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_468_curated_26
unknown

Not on your lists

22917..23207
DNA (291bp) protein (97aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_468_curated_27
unknown

Not on your lists

comp(23204..24445)
DNA (1242bp) protein (414aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_468_curated_28
unknown

Not on your lists

comp(24442..24975)
DNA (534bp) protein (178aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_468_curated_29
Pseudanabaena sp. PCC 7367, Pseudanabaena, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(24972..27014)
DNA (2043bp) protein (681aa)
Type IV secretion system, TraD, DNA-binding domain protein n=1 Tax=Pseudanabaena sp. PCC 7367 RepID=K9SQ87_9CYAN
Type IV secretion system, TraD, DNA-binding domain-containing protein
Type IV secretion system, TraD, DNA-binding domain protein {ECO:0000313|EMBL:AFY71979.1}; TaxID=82654 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Pseudanabaena.;" source="Pseudanabaena sp. PCC 7367.;"
SCNpilot_expt_500_bf_scaffold_468_curated_30
unknown

Not on your lists

comp(27027..27242)
DNA (216bp) protein (72aa)

This feature has no annotations

Displaying 30 items

View Taxonomy