ggKbase home page

SCNpilot_expt_500_bf_scaffold_170_curated

Search features with annotation key words

Displaying items 1-30 of 71 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_170_curated_1
unknown

Not on your lists

1..249
DNA (249bp) protein (83aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_170_curated_2
Flavobacterium cauense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(179..1372)
DNA (1194bp) protein (398aa)
aspC2; aspartate transaminase AspC2 (EC:2.6.1.1); K00812 aspartate aminotransferase [EC:2.6.1.1]
Aspartate aminotransferase n=1 Tax=Flavobacterium cauense R2A-7 RepID=V6S240_9FLAO
Aspartate aminotransferase {ECO:0000313|EMBL:ESU18460.1}; TaxID=1341154 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium cauense R2A-7.;"
SCNpilot_expt_500_bf_scaffold_170_curated_3
Flavobacterium limnosediminis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

1500..2825
DNA (1326bp) protein (442aa)
Uncharacterized protein n=1 Tax=Flavobacterium limnosediminis JC2902 RepID=V6ST63_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:ESU27625.1}; TaxID=1341181 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium limnosediminis JC2902.;"
PDZ/DHR/GLGF domain-containing protein
SCNpilot_expt_500_bf_scaffold_170_curated_4
Flavobacterium beibuense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2852..3283)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Flavobacterium enshiense DK69 RepID=V6SLH8_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KGO79028.1}; TaxID=1406840 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium beibuense F44-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_170_curated_5
Flavobacterium sp. EM1321, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists


3515..6148
DNA (2634bp) protein (878aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=1492738 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1321.;"
valS; valyl-tRNA synthetase (EC:6.1.1.9); K01873 valyl-tRNA synthetase [EC:6.1.1.9]
Valine--tRNA ligase n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FHM0_FLAJ1
SCNpilot_expt_500_bf_scaffold_170_curated_6
Flavobacterium subsaxonicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6215..7000)
DNA (786bp) protein (262aa)
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=1121898 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790.;"
superoxide dismutase (EC:1.15.1.1)
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI00037A9E99
SCNpilot_expt_500_bf_scaffold_170_curated_7
Flavobacterium subsaxonicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7003..7269)
DNA (267bp) protein (89aa)
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI00037E70C5
Phosphatidylserine decarboxylase {ECO:0000313|EMBL:KGO90940.1}; TaxID=1121898 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790.;"
acyl-CoA-binding protein
SCNpilot_expt_500_bf_scaffold_170_curated_8
Flavobacterium subsaxonicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7269..7928)
DNA (660bp) protein (220aa)
Phosphatidylserine decarboxylase proenzyme {ECO:0000256|HAMAP-Rule:MF_00664, ECO:0000256|SAAS:SAAS00154492}; EC=4.1.1.65 {ECO:0000256|HAMAP-Rule:MF_00664, ECO:0000256|SAAS:SAAS00093350};; TaxID=1121898 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790.;"
phosphatidylserine decarboxylase (EC:4.1.1.65); K01613 phosphatidylserine decarboxylase [EC:4.1.1.65]
phosphatidylserine decarboxylase n=1 Tax=Flavobacterium rivuli RepID=UPI0003667C76
SCNpilot_expt_500_bf_scaffold_170_curated_9
Flavobacterium cauense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7921..8724)
DNA (804bp) protein (268aa)
CdsA protein {ECO:0000313|EMBL:ESU18468.1}; EC=2.7.7.41 {ECO:0000313|EMBL:ESU18468.1};; TaxID=1341154 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium cauense R2A-7.;"
cdsA; phosphatidate cytidylyltransferase (EC:2.7.7.41); K00981 phosphatidate cytidylyltransferase [EC:2.7.7.41]
CdsA protein n=1 Tax=Flavobacterium cauense R2A-7 RepID=V6RVB3_9FLAO
SCNpilot_expt_500_bf_scaffold_170_curated_10
Flavobacterium limnosediminis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8726..9325)
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Flavobacterium limnosediminis JC2902 RepID=V6SLW8_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:ESU27616.1}; TaxID=1341181 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium limnosediminis JC2902.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_170_curated_11
Flavobacterium sp. F52, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9437..11377)
DNA (1941bp) protein (647aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1202532 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. F52.;"
ATP-dependent metalloprotease FtsH; K03798 cell division protease FtsH [EC:3.4.24.-]
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Flavobacterium sp. F52 RepID=J1AL67_9FLAO
SCNpilot_expt_500_bf_scaffold_170_curated_12
Flavobacterium saliperosum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11394..11765)
DNA (372bp) protein (124aa)
Iojap protein n=1 Tax=Flavobacterium saliperosum S13 RepID=V6SMF8_9FLAO
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=1341155 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium saliperosum S13.;"
iojap family protein; K09710 ribosome-associated protein
SCNpilot_expt_500_bf_scaffold_170_curated_13
Flavobacterium limnosediminis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

11860..12591
DNA (732bp) protein (244aa)
Biotin-protein ligase {ECO:0000313|EMBL:ESU27613.1}; EC=6.3.4.15 {ECO:0000313|EMBL:ESU27613.1};; TaxID=1341181 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium limnosediminis JC2902.;"
biotin--acetyl-CoA-carboxylase ligase; K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
Biotin-protein ligase n=1 Tax=Flavobacterium limnosediminis JC2902 RepID=V6SLL5_9FLAO
SCNpilot_expt_500_bf_scaffold_170_curated_14
Flavobacterium sp. F52, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12646..13038)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Flavobacterium sp. F52 RepID=J0RVI4_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EJG03102.1}; TaxID=1202532 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. F52.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_170_curated_15
Flavobacterium rivuli, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13055..13720)
DNA (666bp) protein (222aa)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216328}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; TaxID=1121895 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium rivuli WB 3.3-2 = DSM 21788.;"
pyrE; orotate phosphoribosyltransferase; K00762 orotate phosphoribosyltransferase [EC:2.4.2.10]
orotate phosphoribosyltransferase n=1 Tax=Flavobacterium rivuli RepID=UPI000373CE71
SCNpilot_expt_500_bf_scaffold_170_curated_16
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

13728..14330
DNA (603bp) protein (201aa)
ADP-ribose pyrophosphatase n=1 Tax=Flavobacterium sp. CF136 RepID=J2JMA2_9FLAO
NUDIX hydrolase {ECO:0000313|EMBL:KIA85636.1}; TaxID=1423323 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
NUDIX hydrolase
SCNpilot_expt_500_bf_scaffold_170_curated_17
Flavobacterium beibuense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14342..16078)
DNA (1737bp) protein (579aa)
Uncharacterized protein n=1 Tax=Flavobacterium cauense R2A-7 RepID=V6RVC3_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KGO79044.1}; TaxID=1406840 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium beibuense F44-8.;"
M14 family peptidase precursor
SCNpilot_expt_500_bf_scaffold_170_curated_18
Flavobacterium johnsoniae, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

16167..17498
DNA (1332bp) protein (444aa)
DEAD/DEAH box helicase domain protein n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FGM8_FLAJ1
DEAD/DEAH box helicase
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:ABQ05640.1}; TaxID=376686 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101); (Cytophaga johnsonae).;"
SCNpilot_expt_500_bf_scaffold_170_curated_19
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17624..18190)
DNA (567bp) protein (189aa)
PhnA protein-like protein; K06193 phosphonoacetate hydrolase [EC:3.11.1.2]
PhnA protein-like protein n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FGN0_FLAJ1
PhnA protein {ECO:0000313|EMBL:KIA85638.1}; TaxID=1423323 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
SCNpilot_expt_500_bf_scaffold_170_curated_20
Flavobacterium subsaxonicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18622..19080)
DNA (459bp) protein (153aa)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00151}; Pantetheine-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151}; TaxID=1121898 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790.;"
coaD; phosphopantetheine adenylyltransferase (EC:2.7.7.3); K00954 pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
phosphopantetheine adenylyltransferase n=1 Tax=Flavobacterium antarcticum RepID=UPI0003B64EB6
SCNpilot_expt_500_bf_scaffold_170_curated_21
Flavobacterium subsaxonicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19068..20054)
DNA (987bp) protein (329aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=1121898 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790.;"
ddl; D-alanyl-alanine synthetase A (EC:6.3.2.4); K01921 D-alanine-D-alanine ligase [EC:6.3.2.4]
D-alanine--D-alanine ligase n=1 Tax=Flavobacterium antarcticum RepID=UPI0003B6063B
SCNpilot_expt_500_bf_scaffold_170_curated_22
Flavobacterium sp. EM1321, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

20228..20836
DNA (609bp) protein (203aa)
membrane protein n=1 Tax=Flavobacterium antarcticum RepID=UPI0003B371DE
Membrane protein {ECO:0000313|EMBL:KDN55743.1}; TaxID=1492738 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1321.;"
protein PASTA domain-containing protein
SCNpilot_expt_500_bf_scaffold_170_curated_23
Flavobacterium enshiense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

20833..21873
DNA (1041bp) protein (347aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1107311 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium enshiense DK69.;"
23S rRNA pseudouridine synthase (EC:4.2.1.70); K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
RluA family pseudouridine synthase n=1 Tax=Flavobacterium saliperosum S13 RepID=V6SMG8_9FLAO
SCNpilot_expt_500_bf_scaffold_170_curated_24
Mangrovimonas yunxiaonensis, Mangrovimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

22118..22546
DNA (429bp) protein (143aa)
DoxX family protein n=1 Tax=Flavobacterium cauense R2A-7 RepID=V6RX43_9FLAO
DoxX family protein {ECO:0000313|EMBL:KFB00108.1}; TaxID=1197477 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Mangrovimonas.;" source="Mangrovimonas yunxiaonensis.;"
DoxX family protein
SCNpilot_expt_500_bf_scaffold_170_curated_25
unknown

Not on your lists

22715..22906
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_170_curated_26
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22978..23517)
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00036F5EEE
Uncharacterized protein {ECO:0000313|EMBL:KIA92599.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_170_curated_27
Emticicia oligotrophica, Emticicia, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(23638..24105)
DNA (468bp) protein (156aa)
ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15) RepID=I2EWD4_EMTOG
ATP-dependent transcriptional regulator, MalT-like, LuxR family
ATP-dependent transcriptional regulator, MalT-like, LuxR family {ECO:0000313|EMBL:AFK03987.1}; TaxID=929562 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Emticicia.;" source="Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15).;"
SCNpilot_expt_500_bf_scaffold_170_curated_28
Emticicia oligotrophica, Emticicia, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(24238..24654)
DNA (417bp) protein (139aa)
Peroxiredoxin, OsmC subfamily n=1 Tax=Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15) RepID=I2ET63_EMTOG
peroxiredoxin, OsmC subfamily
Peroxiredoxin, OsmC subfamily {ECO:0000313|EMBL:AFK02866.1}; Flags: Precursor;; TaxID=929562 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Emticicia.;" source="Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15).;"
SCNpilot_expt_500_bf_scaffold_170_curated_29
Flavobacterium subsaxonicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24716..25024)
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI00036C8FFD
Uncharacterized protein {ECO:0000313|EMBL:KGO91669.1}; TaxID=1121898 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_170_curated_30
Flavobacterium beibuense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25075..25605)
DNA (531bp) protein (177aa)
hypothetical protein n=1 Tax=Flavobacterium sp. WG21 RepID=UPI00036160B2
Uncharacterized protein {ECO:0000313|EMBL:KGO79049.1}; TaxID=1406840 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium beibuense F44-8.;"
hypothetical protein
Displaying items 1-30 of 71 in total

View Taxonomy