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SCNpilot_expt_500_bf_scaffold_360_curated

Search features with annotation key words

Displaying items 1-30 of 70 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_360_curated_1
Vitellibacter vladivostokensis, Vitellibacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

1..2433
DNA (2433bp) protein (811aa)
hypothetical protein, partial n=1 Tax=Flavobacterium sp. WG21 RepID=UPI000375F698
Uncharacterized protein {ECO:0000313|EMBL:KJJ37261.1}; Flags: Fragment;; TaxID=171194 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Vitellibacter.;" source="Vitellibacter vladivostokensis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_360_curated_2
Flavobacterium aquatile, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

2485..3396
DNA (912bp) protein (304aa)
Putative uncharacterized protein n=1 Tax=Flavobacterium frigoris PS1 RepID=H7FWG6_9FLAO
Membrane protein {ECO:0000313|EMBL:KGD67000.1}; TaxID=1453498 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium aquatile LMG 4008.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_360_curated_3
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

3408..5339
DNA (1932bp) protein (644aa)
Outer membrane lipoprotein omp16 n=1 Tax=Flavobacterium frigoris PS1 RepID=H7FSX8_9FLAO
Flagellar motor protein MotB {ECO:0000313|EMBL:KIA82335.1}; TaxID=1423323 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
OmpA/MotB domain-containing protein
SCNpilot_expt_500_bf_scaffold_360_curated_4
Flavobacterium johnsoniae, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5464..5883)
DNA (420bp) protein (140aa)
OsmC family protein n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FCP2_FLAJ1
OsmC family protein; K04063 osmotically inducible protein OsmC
OsmC family protein {ECO:0000313|EMBL:ABQ07036.1}; TaxID=376686 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101); (Cytophaga johnsonae).;"
SCNpilot_expt_500_bf_scaffold_360_curated_5
Flavobacterium beibuense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5920..6948)
DNA (1029bp) protein (343aa)
Esterase/lipase n=1 Tax=Desulfovibrio africanus PCS RepID=M5Q1M1_DESAF
Uncharacterized protein {ECO:0000313|EMBL:KGO80754.1}; TaxID=1406840 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium beibuense F44-8.;"
alpha/beta hydrolase
SCNpilot_expt_500_bf_scaffold_360_curated_6
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7061..8032
DNA (972bp) protein (324aa)
Transcriptional regulator, LysR family n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FCM7_FLAJ1
LysR family transcriptional regulator {ECO:0000313|EMBL:KIA91573.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
LysR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_360_curated_7
unknown

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comp(8321..8719)
DNA (399bp) protein (133aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_360_curated_8
unknown

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comp(8877..9092)
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_360_curated_9
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9125..13285)
DNA (4161bp) protein (1387aa)
Mucin 2, oligomeric mucus/gel-forming n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TGW1_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:GAO45730.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
mucin 2, oligomeric mucus/gel-forming
SCNpilot_expt_500_bf_scaffold_360_curated_10
Flavobacterium rivuli, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13485..14444)
DNA (960bp) protein (320aa)
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI00037B47B9
Uncharacterized protein {ECO:0000313|EMBL:KGO84582.1}; Flags: Fragment;; TaxID=1121895 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium rivuli WB 3.3-2 = DSM 21788.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_360_curated_11
Flavobacterium aquatile, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14556..15908)
DNA (1353bp) protein (451aa)
CHU large protein uncharacterized n=1 Tax=Flavobacteria bacterium BAL38 RepID=A3J5S6_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KGD68707.1}; TaxID=1453498 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium aquatile LMG 4008.;"
mucin 2, oligomeric mucus/gel-forming
SCNpilot_expt_500_bf_scaffold_360_curated_12
Flavobacterium limnosediminis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17536..20856)
DNA (3321bp) protein (1107aa)
Uncharacterized protein n=1 Tax=Flavobacterium enshiense DK69 RepID=V6S7Z1_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:ESU27360.1}; TaxID=1341181 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium limnosediminis JC2902.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_360_curated_13
unknown

Not on your lists

comp(21404..21598)
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_360_curated_14
Nonlabens marinus, Nonlabens, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21611..24361)
DNA (2751bp) protein (917aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000379F649
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAO54215.1}; TaxID=1454201 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Nonlabens.;" source="Nonlabens marinus S1-08.;"
SCNpilot_expt_500_bf_scaffold_360_curated_15
Flavobacterium reichenbachii, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24677..25480)
DNA (804bp) protein (268aa)
AraC family transcriptional regulator n=1 Tax=Flavobacterium sp. F52 RepID=J0RXT0_9FLAO
AraC family transcriptional regulator {ECO:0000313|EMBL:KFF06854.1}; TaxID=362418 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium reichenbachii.;"
AraC family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_360_curated_16
Flavobacterium sp. F52, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25554..26969)
DNA (1416bp) protein (472aa)
Aldehyde dehydrogenase n=1 Tax=Flavobacterium sp. F52 RepID=J1KRV1_9FLAO
Aldehyde dehydrogenase {ECO:0000313|EMBL:EJG00571.1}; TaxID=1202532 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. F52.;"
aldehyde dehydrogenase
SCNpilot_expt_500_bf_scaffold_360_curated_17
Flavobacterium rivuli, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

27165..27986
DNA (822bp) protein (274aa)
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI0003777511
Short-chain dehydrogenase {ECO:0000313|EMBL:KGO86053.1}; TaxID=1121895 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium rivuli WB 3.3-2 = DSM 21788.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_500_bf_scaffold_360_curated_18
Flavobacterium rivuli, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

28065..28961
DNA (897bp) protein (299aa)
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI0003607E00
AraC family transcriptional regulator {ECO:0000313|EMBL:KGO86052.1}; TaxID=1121895 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium rivuli WB 3.3-2 = DSM 21788.;"
AraC family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_360_curated_19
Flavobacterium hydatis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

29062..30429
DNA (1368bp) protein (456aa)
Coproporphyrinogen-III oxidase {ECO:0000256|PIRNR:PIRNR000167}; EC=1.3.99.22 {ECO:0000256|PIRNR:PIRNR000167};; TaxID=991 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium hydatis (Cytophaga aquatilis).;"
hemN; coproporphyrinogen III oxidase (EC:1.3.3.3); K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22]
Coproporphyrinogen-III oxidase n=1 Tax=Flavobacterium frigoris PS1 RepID=H7FSM3_9FLAO
SCNpilot_expt_500_bf_scaffold_360_curated_20
Flavobacterium aquatile, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(30647..31348)
DNA (702bp) protein (234aa)
Membrane protein {ECO:0000313|EMBL:KGD68532.1}; TaxID=1453498 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium aquatile LMG 4008.;"
Putative uncharacterized protein id=2505200 bin=GWF1_Flavobacteria_32_7 species=Flavobacteria bacterium BAL38 genus=unknown taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF1_Flavobacteria_32_7 organism_group=Bacteroidetes
hypothetical protein
SCNpilot_expt_500_bf_scaffold_360_curated_21
Flavobacterium saliperosum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(31355..31807)
DNA (453bp) protein (151aa)
Cytochrome cbb3 oxidase maturation protein CcoH n=1 Tax=Flavobacterium saliperosum S13 RepID=V6SMX8_9FLAO
Cytochrome cbb3 oxidase maturation protein CcoH {ECO:0000313|EMBL:ESU25750.1}; TaxID=1341155 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium saliperosum S13.;"
cytochrome cbb3 oxidase maturation protein CcoH
SCNpilot_expt_500_bf_scaffold_360_curated_22
Flavobacterium saliperosum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(31859..33277)
DNA (1419bp) protein (473aa)
4Fe-4S ferredoxin n=1 Tax=Flavobacterium saliperosum S13 RepID=V6SH28_9FLAO
4Fe-4S ferredoxin {ECO:0000313|EMBL:ESU25749.1}; TaxID=1341155 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium saliperosum S13.;"
4Fe-4S ferredoxin
SCNpilot_expt_500_bf_scaffold_360_curated_23
Flavobacterium beibuense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(33304..34236)
DNA (933bp) protein (311aa)
Cytochrome c, class I n=1 Tax=Flavobacterium enshiense DK69 RepID=V6SFH8_9FLAO
Cytochrome C oxidase subunit III {ECO:0000313|EMBL:KGO79147.1}; TaxID=1406840 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium beibuense F44-8.;"
cytochrome c, class I
SCNpilot_expt_500_bf_scaffold_360_curated_24
Flavobacterium suncheonense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(34233..34436)
DNA (204bp) protein (68aa)
Cytochrome c oxidase, cbb3-type subunit IV n=1 Tax=Flavobacterium saliperosum S13 RepID=V6SHL5_9FLAO
Cytochrome C oxidase subunit IV {ECO:0000313|EMBL:KGO88972.1}; TaxID=1121899 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium suncheonense GH29-5 = DSM 17707.;"
ccoQ; cytochrome c oxidase, cbb3-type subunit IV
SCNpilot_expt_500_bf_scaffold_360_curated_25
Flavobacterium beibuense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(34441..36633)
DNA (2193bp) protein (731aa)
putative bifunctional cbb3-type cytochrome c oxidase subunit I/II; K15862 cytochrome c oxidase cbb3-type subunit I/II [EC:1.9.3.1]
Cytochrome c oxidase subunit CcoN / Cytochrome c oxidase subunit CcoO n=1 Tax=Flavobacterium saliperosum S13 RepID=V6SGQ6_9FLAO
Bifunctional cbb3-type cytochrome c oxidase subunit I/II {ECO:0000313|EMBL:KGO79145.1}; TaxID=1406840 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium beibuense F44-8.;"
SCNpilot_expt_500_bf_scaffold_360_curated_26
Flavobacterium psychrophilum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(36666..36869)
DNA (204bp) protein (68aa)
Probable cytochrome cbb3 oxidase maturation protein CcoS n=1 Tax=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) RepID=A6GYR8_FLAPJ
ccoS; cytochrome cbb3 oxidase maturation protein CcoS
Cytochrome oxidase maturation protein Cbb3 {ECO:0000313|EMBL:AIG32230.1}; Nitrogen fixation protein fixS {ECO:0000313|EMBL:AIJ38561.1}; TaxID=96345 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium psychrophilum.;"
SCNpilot_expt_500_bf_scaffold_360_curated_27
Flavobacterium subsaxonicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(36930..39320)
DNA (2391bp) protein (797aa)
ccoI; cytochrome cbb3 oxidase maturation protein CcoI; K01533 Cu2+-exporting ATPase [EC:3.6.3.4]
Probable cytochrome cbb3 oxidase maturation protein CcoI id=4591741 bin=GWA2_Flavobacterium_35_26 species=Flavobacterium psychrophilum genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWA2_Flavobacterium_35_26 organism_group=Bacteroidetes organism_desc=Good+ six scaffolds
ATPase {ECO:0000313|EMBL:KGO94956.1}; TaxID=1121898 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790.;"
SCNpilot_expt_500_bf_scaffold_360_curated_28
Flavobacterium sp. EM1321, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

39426..40106
DNA (681bp) protein (227aa)
Crp/Fnr family transcriptional regulator {ECO:0000313|EMBL:KDN54634.1}; TaxID=1492738 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1321.;"
Transcriptional regulator, Crp/Fnr family id=4591740 bin=GWA2_Flavobacterium_35_26 species=Flavobacterium frigoris genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWA2_Flavobacterium_35_26 organism_group=Bacteroidetes organism_desc=Good+ six scaffolds
Crp/Fnr family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_360_curated_29
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

40228..41325
DNA (1098bp) protein (366aa)
Signal transduction histidine kinase, LytS n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W292_DYAFD
Uncharacterized protein {ECO:0000313|EMBL:ETZ20472.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
signal transduction histidine kinase LytS
SCNpilot_expt_500_bf_scaffold_360_curated_30
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

41322..42086
DNA (765bp) protein (255aa)
LytTR family two component transcriptional regulator n=1 Tax=Elizabethkingia meningoseptica ATCC 13253 = NBRC 12535 RepID=R9CKR3_ELIME
Uncharacterized protein {ECO:0000313|EMBL:ETZ20473.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
LytTR family two component transcriptional regulator
Displaying items 1-30 of 70 in total

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