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SCNpilot_expt_500_bf_scaffold_1486_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1486_curated_1
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..617)
DNA (615bp) protein (205aa)
Integral membrane protein TerC n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UVX4_9SPHN
Integral membrane protein TerC {ECO:0000313|EMBL:ENY82434.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
integral membrane protein TerC
SCNpilot_expt_500_bf_scaffold_1486_curated_2
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(614..907)
DNA (294bp) protein (98aa)
Antibiotic biosynthesis monooxygenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UVD6_9SPHN
Antibiotic biosynthesis monooxygenase {ECO:0000313|EMBL:ENY82435.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
antibiotic biosynthesis monooxygenase; K07145
SCNpilot_expt_500_bf_scaffold_1486_curated_3
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(914..2170)
DNA (1257bp) protein (419aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
Transcription termination factor Rho n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WG63_9SPHN
rho; transcription termination factor Rho; K03628 transcription termination factor Rho
SCNpilot_expt_500_bf_scaffold_1486_curated_4
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2363..2815)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W4G9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82437.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein; K08973 putative membrane protein
SCNpilot_expt_500_bf_scaffold_1486_curated_5
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2820..3848)
DNA (1029bp) protein (343aa)
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|SAAS:SAAS00078187}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|SAAS:SAAS00078176};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hemE; uroporphyrinogen decarboxylase; K01599 uroporphyrinogen decarboxylase [EC:4.1.1.37]
Uroporphyrinogen decarboxylase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WFC5_9SPHN
SCNpilot_expt_500_bf_scaffold_1486_curated_6
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4185..5003
DNA (819bp) protein (273aa)
Putative pyruvate, phosphate dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921}; Short=PPDK regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.11.32 {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.4.27 {ECO:0000256|HAMAP-Rule:MF_00921};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
Putative pyruvate, phosphate dikinase regulatory protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UVX9_9SPHN
hypothetical protein; K09773 hypothetical protein
SCNpilot_expt_500_bf_scaffold_1486_curated_7
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5000..5599
DNA (600bp) protein (200aa)
Maf-like protein EBMC1_06114 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UVE1_9SPHN
Maf-like protein EBMC1_06114 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
maf protein; K06287 septum formation protein
SCNpilot_expt_500_bf_scaffold_1486_curated_8
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5596..6420
DNA (825bp) protein (275aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
shikimate 5-dehydrogenase; K00014 shikimate dehydrogenase [EC:1.1.1.25]
Shikimate dehydrogenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WG67_9SPHN
SCNpilot_expt_500_bf_scaffold_1486_curated_9
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6417..7040
DNA (624bp) protein (208aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
coaE; dephospho-CoA kinase; K00859 dephospho-CoA kinase [EC:2.7.1.24]
Dephospho-CoA kinase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W4H5_9SPHN
SCNpilot_expt_500_bf_scaffold_1486_curated_10
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7060..7761
DNA (702bp) protein (234aa)
DNA polymerase III subunit epsilon; K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7]
DNA polymerase III subunit epsilon n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WFD2_9SPHN
DNA polymerase III subunit epsilon {ECO:0000313|EMBL:ENY82443.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1486_curated_11
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7809..8384
DNA (576bp) protein (192aa)
Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UVY4_9SPHN
Sigma 54 modulation protein/ribosomal protein S30EA {ECO:0000313|EMBL:ENY82444.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
sigma 54 modulation protein/ribosomal protein S30EA
SCNpilot_expt_500_bf_scaffold_1486_curated_12
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8549..9013
DNA (465bp) protein (155aa)
putative PTS IIA-like nitrogen-regulatory protein PtsN; K02806 PTS system, nitrogen regulatory IIA component [EC:2.7.1.69]
Putative PTS IIA-like nitrogen-regulatory protein PtsN n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UVE8_9SPHN
Putative PTS IIA-like nitrogen-regulatory protein PtsN {ECO:0000313|EMBL:ENY82445.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1486_curated_13
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9035..9373
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WG71_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82446.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1486_curated_14
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9569..10201
DNA (633bp) protein (211aa)
Cell wall hydrolase SleB n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W4I0_9SPHN
Cell wall hydrolase SleB {ECO:0000313|EMBL:ENY82447.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
cell wall hydrolase SleB
SCNpilot_expt_500_bf_scaffold_1486_curated_15
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10275..10901
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WFD5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82448.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1486_curated_16
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10898..11635
DNA (738bp) protein (246aa)
Peptidase M14, carboxypeptidase A n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UVZ0_9SPHN
Peptidase M14, carboxypeptidase A {ECO:0000313|EMBL:ENY82449.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
peptidase M14, carboxypeptidase A
Displaying 16 items

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