ggKbase home page

SCNpilot_expt_500_bf_scaffold_1277_curated

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1277_curated_1
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..453)
DNA (453bp) protein (151aa)
prolyl oligopeptidase; K01322 prolyl oligopeptidase [EC:3.4.21.26]
Prolyl oligopeptidase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W637_9SPHN
Prolyl oligopeptidase {ECO:0000313|EMBL:ENY83002.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1277_curated_2
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1608..2294
DNA (687bp) protein (229aa)
Putative uncharacterized protein n=1 Tax=Burkholderia pseudomallei (strain 1710b) RepID=Q3JJ33_BURP1
Uncharacterised protein {ECO:0000313|EMBL:CRE04054.1}; TaxID=520 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1277_curated_3
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2309..3217
DNA (909bp) protein (303aa)
hydroxymethylglutaryl-CoA lyase (EC:4.1.3.4); K01640 hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
Hydroxymethylglutaryl-CoA lyase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UX19_9SPHN
Hydroxymethylglutaryl-CoA lyase {ECO:0000313|EMBL:ENY83000.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1277_curated_4
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3222..3674)
DNA (453bp) protein (151aa)
Putative K+ channel TrkA-N n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UXM2_9SPHN
Putative K+ channel TrkA-N {ECO:0000313|EMBL:ENY82999.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
putative K+ channel TrkA-N
SCNpilot_expt_500_bf_scaffold_1277_curated_5
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3721..4329)
DNA (609bp) protein (203aa)
Type 11 methyltransferase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WH40_9SPHN
Type 11 methyltransferase {ECO:0000313|EMBL:ENY82998.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
type 11 methyltransferase
SCNpilot_expt_500_bf_scaffold_1277_curated_6
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4343..4987)
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W632_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82997.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1277_curated_7
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5010..5765)
DNA (756bp) protein (252aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WHP7_9SPHN
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ENY82996.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_500_bf_scaffold_1277_curated_8
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5752..7806)
DNA (2055bp) protein (685aa)
AMP-dependent synthetase and ligase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UX14_9SPHN
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ENY82995.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
AMP-dependent synthetase and ligase
SCNpilot_expt_500_bf_scaffold_1277_curated_9
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7808..8359)
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UXL6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82994.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1277_curated_10
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8886..9131)
DNA (246bp) protein (82aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
sensor signal transduction histidine kinase; K15011 two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
Sensor signal transduction histidine kinase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W626_9SPHN
SCNpilot_expt_500_bf_scaffold_1277_curated_11
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10130..10855)
DNA (726bp) protein (242aa)
Surfeit locus 1 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WHP2_9SPHN
Surfeit locus 1 {ECO:0000313|EMBL:ENY82991.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
Surfeit locus 1; K14998 surfeit locus 1 family protein
SCNpilot_expt_500_bf_scaffold_1277_curated_12
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10852..11232)
DNA (381bp) protein (127aa)
Cytochrome C oxidase subunit IV n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UX09_9SPHN
Cytochrome C oxidase subunit IV {ECO:0000313|EMBL:ENY82990.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
cytochrome C oxidase subunit IV; K02300 cytochrome o ubiquinol oxidase operon protein cyoD
SCNpilot_expt_500_bf_scaffold_1277_curated_13
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11229..11858)
DNA (630bp) protein (210aa)
cytochrome c oxidase subunit III; K02299 cytochrome o ubiquinol oxidase subunit III [EC:1.10.3.-]
Cytochrome c oxidase subunit III n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UXL1_9SPHN
Cytochrome c oxidase subunit III {ECO:0000313|EMBL:ENY82989.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1277_curated_14
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11862..13871)
DNA (2010bp) protein (670aa)
cytochrome-c oxidase; K02298 cytochrome o ubiquinol oxidase subunit I [EC:1.10.3.-]
Cytochrome-c oxidase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WH28_9SPHN
Cytochrome-c oxidase {ECO:0000313|EMBL:ENY82988.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1277_curated_15
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13892..15076)
DNA (1185bp) protein (395aa)
ubiquinol oxidase subunit II; K02297 cytochrome o ubiquinol oxidase subunit II [EC:1.10.3.-]
Ubiquinol oxidase subunit II n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W619_9SPHN
Ubiquinol oxidase subunit II {ECO:0000313|EMBL:ENY82987.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1277_curated_16
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15265..16593
DNA (1329bp) protein (443aa)
General substrate transporter n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WHN7_9SPHN
General substrate transporter {ECO:0000313|EMBL:ENY82986.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
general substrate transporter
SCNpilot_expt_500_bf_scaffold_1277_curated_17
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16673..17083
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UX02_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82985.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1277_curated_18
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17149..17664
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UXK6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82984.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1277_curated_19
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17835..18320
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WH21_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82983.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein; K09796 hypothetical protein
SCNpilot_expt_500_bf_scaffold_1277_curated_20
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18307..18933
DNA (627bp) protein (209aa)
Electron transport protein SCO1/SenC n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W615_9SPHN
Electron transport protein SCO1/SenC {ECO:0000313|EMBL:ENY82982.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
electron transport protein SCO1/SenC; K07152
SCNpilot_expt_500_bf_scaffold_1277_curated_21
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18973..20784)
DNA (1812bp) protein (604aa)
Diguanylate cyclase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WHN3_9SPHN
Diguanylate cyclase {ECO:0000313|EMBL:ENY82981.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
diguanylate cyclase
SCNpilot_expt_500_bf_scaffold_1277_curated_22
Ricinus communis, Ricinus, Malpighiales, rosids, Streptophyta, Viridiplantae

Not on your lists

comp(20872..21867)
DNA (996bp) protein (332aa)
Putative uncharacterized protein (Fragment) n=1 Tax=Ricinus communis RepID=B9TQD6_RICCO
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EEF21928.1}; Flags: Fragment;; TaxID=3988 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus.;" source="Ricinus communis (Castor bean).;"
SCNpilot_expt_500_bf_scaffold_1277_curated_23
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22835..23626
DNA (792bp) protein (264aa)
NUDIX hydrolase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WH15_9SPHN
NUDIX hydrolase {ECO:0000313|EMBL:ENY82978.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
NUDIX hydrolase
SCNpilot_expt_500_bf_scaffold_1277_curated_24
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23805..24035
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W609_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82977.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1277_curated_25
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24163..24981)
DNA (819bp) protein (273aa)
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WHM7_9SPHN
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase {ECO:0000313|EMBL:ENY82976.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
SCNpilot_expt_500_bf_scaffold_1277_curated_26
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25109..28051
DNA (2943bp) protein (981aa)
peptidase M16-like protein; K07263 zinc protease [EC:3.4.24.-]
Peptidase M16-like protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UWZ2_9SPHN
Peptidase M16-like protein {ECO:0000313|EMBL:ENY82975.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1277_curated_27
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28052..29809)
DNA (1758bp) protein (586aa)
Sodium/hydrogen exchanger n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UXJ4_9SPHN
Sodium/hydrogen exchanger {ECO:0000313|EMBL:ENY82974.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
sodium/hydrogen exchanger; K03455 monovalent cation:H+ antiporter-2, CPA2 family
SCNpilot_expt_500_bf_scaffold_1277_curated_28
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29874..31061)
DNA (1188bp) protein (396aa)
Isocitrate dehydrogenase [NADP] {ECO:0000256|PIRNR:PIRNR000108}; EC=1.1.1.42 {ECO:0000256|PIRNR:PIRNR000108};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
isocitrate dehydrogenase; K00031 isocitrate dehydrogenase [EC:1.1.1.42]
Isocitrate dehydrogenase [NADP] n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WH10_9SPHN
SCNpilot_expt_500_bf_scaffold_1277_curated_29
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31208..31942
DNA (735bp) protein (245aa)
Phosphatidylserine decarboxylase proenzyme {ECO:0000256|HAMAP-Rule:MF_00664, ECO:0000256|SAAS:SAAS00154492}; EC=4.1.1.65 {ECO:0000256|HAMAP-Rule:MF_00664, ECO:0000256|SAAS:SAAS00093350};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
phosphatidylserine decarboxylase; K01613 phosphatidylserine decarboxylase [EC:4.1.1.65]
Phosphatidylserine decarboxylase proenzyme n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W603_9SPHN
SCNpilot_expt_500_bf_scaffold_1277_curated_30
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31942..32715
DNA (774bp) protein (258aa)
CDP-alcohol phosphatidyltransferase; K00998 phosphatidylserine synthase [EC:2.7.8.8]
CDP-alcohol phosphatidyltransferase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WHM4_9SPHN
CDP-alcohol phosphatidyltransferase {ECO:0000313|EMBL:ENY82971.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
Displaying items 1-30 of 60 in total

View Taxonomy