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SCNpilot_expt_500_bf_scaffold_1978_curated

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1978_curated_1
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..123)
DNA (123bp) protein (41aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WGS1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82893.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1978_curated_2
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(655..867)
DNA (213bp) protein (71aa)
Regulatory protein, LuxR n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W5R2_9SPHN
Regulatory protein, LuxR {ECO:0000313|EMBL:ENY82892.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
regulatory protein, LuxR
SCNpilot_expt_500_bf_scaffold_1978_curated_3
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1545..3950
DNA (2406bp) protein (802aa)
TonB-dependent receptor n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WHE8_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:ENY82891.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
TonB-dependent receptor
SCNpilot_expt_500_bf_scaffold_1978_curated_4
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3977..4876
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UWR6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82890.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1978_curated_5
unknown

Not on your lists

5053..5232
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1978_curated_6
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5309..6511)
DNA (1203bp) protein (401aa)
Zinc carboxypeptidase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UXA9_9SPHN
Zinc carboxypeptidase {ECO:0000313|EMBL:ENY82889.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
zinc carboxypeptidase
SCNpilot_expt_500_bf_scaffold_1978_curated_7
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6516..8129)
DNA (1614bp) protein (538aa)
TonB-dependent receptor n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WGR8_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:ENY82888.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
TonB-dependent receptor
SCNpilot_expt_500_bf_scaffold_1978_curated_8
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8156..9520)
DNA (1365bp) protein (455aa)
TonB-dependent receptor n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WGR8_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:ENY82888.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
TonB-dependent receptor
SCNpilot_expt_500_bf_scaffold_1978_curated_9
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9550..10494)
DNA (945bp) protein (315aa)
xynB; twin-arginine translocation pathway signal sequence domain-containing protein (EC:3.2.1.8)
Twin-arginine translocation pathway signal sequence domain-containing protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W5Q7_9SPHN
Twin-arginine translocation pathway signal sequence domain-containing protein {ECO:0000313|EMBL:ENY82887.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1978_curated_10
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10491..11876)
DNA (1386bp) protein (462aa)
C4-dicarboxylate transport protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WHE4_9SPHN
C4-dicarboxylate transport protein {ECO:0000256|HAMAP-Rule:MF_01300}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
C4-dicarboxylate transporter DctA; K11103 aerobic C4-dicarboxylate transport protein
SCNpilot_expt_500_bf_scaffold_1978_curated_11
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12075..13757
DNA (1683bp) protein (561aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
histidine kinase; K10125 two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
Histidine kinase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UWR3_9SPHN
SCNpilot_expt_500_bf_scaffold_1978_curated_12
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13754..15076
DNA (1323bp) protein (441aa)
Two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UXA4_9SPHN
Two component, sigma54 specific, transcriptional regulator, Fis family protein {ECO:0000313|EMBL:ENY82884.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
C4-dicarboxylate transport transcriptional regulatory protein
SCNpilot_expt_500_bf_scaffold_1978_curated_13
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15196..16323
DNA (1128bp) protein (376aa)
Signal transduction histidine kinase LytS n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WGR3_9SPHN
Signal transduction histidine kinase LytS {ECO:0000313|EMBL:ENY82883.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
signal transduction histidine kinase LytS
SCNpilot_expt_500_bf_scaffold_1978_curated_14
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16482..17354)
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W5Q3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82882.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1978_curated_15
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17408..17995
DNA (588bp) protein (196aa)
Nitrogen-fixing NifU-like protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WHD8_9SPHN
Nitrogen-fixing NifU-like protein {ECO:0000313|EMBL:ENY82881.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
nitrogen-fixing NifU-like protein
SCNpilot_expt_500_bf_scaffold_1978_curated_16
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18020..18613
DNA (594bp) protein (198aa)
Putative NADH dehydrogenase/NAD(P)H nitroreductase EBMC1_02220 {ECO:0000256|HAMAP-Rule:MF_01204}; EC=1.-.-.- {ECO:0000256|HAMAP-Rule:MF_01204};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein; K00540 [EC:1.-.-.-]
Putative NADH dehydrogenase/NAD(P)H nitroreductase EBMC1_02220 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UWQ8_9SPHN
SCNpilot_expt_500_bf_scaffold_1978_curated_17
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18588..19232
DNA (645bp) protein (215aa)
Peptidase M22, glycoprotease n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UX98_9SPHN
Peptidase M22, glycoprotease {ECO:0000313|EMBL:ENY82879.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
peptidase M22, glycoprotease
SCNpilot_expt_500_bf_scaffold_1978_curated_18
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19229..19708
DNA (480bp) protein (160aa)
N-acetyltransferase GCN5; K03789 ribosomal-protein-alanine N-acetyltransferase [EC:2.3.1.128]
N-acetyltransferase GCN5 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WGQ8_9SPHN
N-acetyltransferase GCN5 {ECO:0000313|EMBL:ENY82878.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1978_curated_19
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19821..20252
DNA (432bp) protein (144aa)
MucR family transcriptional regulator n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W5P9_9SPHN
MucR family transcriptional regulator {ECO:0000313|EMBL:ENY82877.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
MucR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_1978_curated_20
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20377..20802
DNA (426bp) protein (142aa)
Ferric uptake regulator family protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WHD5_9SPHN
Ferric uptake regulator family protein {ECO:0000313|EMBL:ENY82876.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
ferric uptake regulator family protein; K03711 Fur family transcriptional regulator, ferric uptake regulator
SCNpilot_expt_500_bf_scaffold_1978_curated_21
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20774..21568
DNA (795bp) protein (265aa)
Phospholipid/glycerol acyltransferase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UWQ3_9SPHN
Phospholipid/glycerol acyltransferase {ECO:0000313|EMBL:ENY82875.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
phospholipid/glycerol acyltransferase
SCNpilot_expt_500_bf_scaffold_1978_curated_22
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21576..22928
DNA (1353bp) protein (451aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UX92_9SPHN
(dimethylallyl)adenosine tRNA methylthiotransferase; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA
SCNpilot_expt_500_bf_scaffold_1978_curated_23
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23383..24033
DNA (651bp) protein (217aa)
PhoH-like protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WGQ4_9SPHN
PhoH-like protein {ECO:0000313|EMBL:ENY82873.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
PhoH-like protein; K06217 phosphate starvation-inducible protein PhoH and related proteins
SCNpilot_expt_500_bf_scaffold_1978_curated_24
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24063..24446)
DNA (384bp) protein (128aa)
DoxX protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W5P6_9SPHN
DoxX protein {ECO:0000313|EMBL:ENY82872.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
DoxX protein; K15977 putative oxidoreductase
SCNpilot_expt_500_bf_scaffold_1978_curated_25
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24585..25037
DNA (453bp) protein (151aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
Alkylhydroperoxidase AhpD core n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WHC9_9SPHN
alkylhydroperoxidase AhpD core
SCNpilot_expt_500_bf_scaffold_1978_curated_26
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25034..25906
DNA (873bp) protein (291aa)
RNA polymerase sigma factor SigJ n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UWP8_9SPHN
RNA polymerase sigma factor SigJ {ECO:0000313|EMBL:ENY82870.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
RNA polymerase sigma factor SigJ; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_500_bf_scaffold_1978_curated_27
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25980..27299
DNA (1320bp) protein (440aa)
Penicillin-binding protein 1A n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UX89_9SPHN
Penicillin-binding protein 1A {ECO:0000313|EMBL:ENY82869.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
penicillin-binding protein 1A
SCNpilot_expt_500_bf_scaffold_1978_curated_28
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27317..27985
DNA (669bp) protein (223aa)
Penicillin-binding protein 1A n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UX89_9SPHN
Penicillin-binding protein 1A {ECO:0000313|EMBL:ENY82869.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
penicillin-binding protein 1A
SCNpilot_expt_500_bf_scaffold_1978_curated_29
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28104..28610
DNA (507bp) protein (169aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
Endoribonuclease YbeY n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WGQ0_9SPHN
hypothetical protein; K07042 probable rRNA maturation factor
SCNpilot_expt_500_bf_scaffold_1978_curated_30
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28628..29569
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W5P0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82867.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
Displaying items 1-30 of 44 in total

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