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SCNpilot_expt_500_bf_scaffold_737_curated

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_737_curated_1
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..586)
DNA (585bp) protein (195aa)
carboxylesterase; K01070 S-formylglutathione hydrolase [EC:3.1.2.12]
Carboxylesterase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VX34_9SPHN
Carboxylesterase {ECO:0000313|EMBL:ENY79842.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_737_curated_2
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(583..1041)
DNA (459bp) protein (153aa)
YbaK/prolyl-tRNA synthetase associated domain-containing protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W8R4_9SPHN
YbaK/prolyl-tRNA synthetase associated domain-containing protein {ECO:0000313|EMBL:ENY79841.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
YbaK/prolyl-tRNA synthetase associated domain-containing protein
SCNpilot_expt_500_bf_scaffold_737_curated_3
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1057..1437)
DNA (381bp) protein (127aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UN12_9SPHN
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ENY79840.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
glyoxalase/bleomycin resistance protein/dioxygenase
SCNpilot_expt_500_bf_scaffold_737_curated_4
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1493..2365)
DNA (873bp) protein (291aa)
Formyltetrahydrofolate deformylase {ECO:0000256|HAMAP-Rule:MF_01927}; EC=3.5.1.10 {ECO:0000256|HAMAP-Rule:MF_01927};; Formyl-FH(4) hydrolase {ECO:0000256|HAMAP-Rule:MF_01927}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
Formyltetrahydrofolate deformylase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UNC3_9SPHN
formyltetrahydrofolate deformylase
SCNpilot_expt_500_bf_scaffold_737_curated_5
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2367..2753)
DNA (387bp) protein (129aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W7Z7_9SPHN
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ENY79838.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
glyoxalase/bleomycin resistance protein/dioxygenase
SCNpilot_expt_500_bf_scaffold_737_curated_6
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2772..3884)
DNA (1113bp) protein (371aa)
S-(hydroxymethyl)glutathione dehydrogenase {ECO:0000256|RuleBase:RU362016}; EC=1.1.1.284 {ECO:0000256|RuleBase:RU362016};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
S-(Hydroxymethyl)glutathione dehydrogenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VX28_9SPHN
zinc-binding alcohol dehydrogenase
SCNpilot_expt_500_bf_scaffold_737_curated_7
unknown

Not on your lists

comp(4520..4807)
DNA (288bp) protein (96aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_737_curated_8
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4956..6335)
DNA (1380bp) protein (460aa)
L-serine dehydratase 1; K01752 L-serine dehydratase [EC:4.3.1.17]
L-serine dehydratase 1 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W8Q8_9SPHN
L-serine dehydratase 1 {ECO:0000313|EMBL:ENY79836.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_737_curated_9
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6507..7121)
DNA (615bp) protein (205aa)
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
superoxide dismutase; K04564 superoxide dismutase, Fe-Mn family [EC:1.15.1.1]
Superoxide dismutase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UN07_9SPHN
SCNpilot_expt_500_bf_scaffold_737_curated_10
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7211..8929)
DNA (1719bp) protein (573aa)
ATP-dependent DNA ligase {ECO:0000313|EMBL:ENY79834.1}; EC=6.5.1.1 {ECO:0000313|EMBL:ENY79834.1};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
ATP-dependent DNA ligase; K01971 DNA ligase (ATP) [EC:6.5.1.1]
ATP-dependent DNA ligase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UNB7_9SPHN
SCNpilot_expt_500_bf_scaffold_737_curated_11
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8926..9936)
DNA (1011bp) protein (337aa)
Putative mRNA 3-end processing factor n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W7Z3_9SPHN
Putative mRNA 3-end processing factor {ECO:0000313|EMBL:ENY79833.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
putative mRNA 3-end processing factor; K07577 putative mRNA 3-end processing factor
SCNpilot_expt_500_bf_scaffold_737_curated_12
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9936..11366)
DNA (1431bp) protein (477aa)
phage SPO1 DNA polymerase-related protein; K02334 DNA polymerase bacteriophage-type [EC:2.7.7.7]
Phage SPO1 DNA polymerase-related protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VX25_9SPHN
Phage SPO1 DNA polymerase-related protein {ECO:0000313|EMBL:ENY79832.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_737_curated_13
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11363..12613)
DNA (1251bp) protein (417aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W8Q2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY79831.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_737_curated_14
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12665..14245)
DNA (1581bp) protein (527aa)
Signal transduction histidine kinase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UN02_9SPHN
Signal transduction histidine kinase {ECO:0000313|EMBL:ENY79830.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
signal transduction histidine kinase
SCNpilot_expt_500_bf_scaffold_737_curated_15
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14458..15246
DNA (789bp) protein (263aa)
Two-component response regulator n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UNB3_9SPHN
Two-component response regulator {ECO:0000313|EMBL:ENY79829.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
two-component response regulator
SCNpilot_expt_500_bf_scaffold_737_curated_16
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15622..16176)
DNA (555bp) protein (185aa)
ECF subfamily RNA polymerase sigma-24 factor n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W6P6_9SPHN
ECF subfamily RNA polymerase sigma-24 factor {ECO:0000313|EMBL:ENY83177.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_500_bf_scaffold_737_curated_17
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16333..16749)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WHS2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY83178.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_737_curated_18
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16915..17172
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UY92_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY83179.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_737_curated_19
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17172..17807
DNA (636bp) protein (212aa)
ECF subfamily RNA polymerase sigma-24 factor n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UXP5_9SPHN
ECF subfamily RNA polymerase sigma-24 factor {ECO:0000313|EMBL:ENY83180.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_500_bf_scaffold_737_curated_20
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17887..19059
DNA (1173bp) protein (391aa)
Glucose sorbosone dehydrogenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WI88_9SPHN
Glucose sorbosone dehydrogenase {ECO:0000313|EMBL:ENY83181.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
glucose sorbosone dehydrogenase
Displaying 20 items

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