ggKbase home page

SCNpilot_expt_500_bf_scaffold_1868_curated

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1868_curated_1
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..492)
DNA (492bp) protein (164aa)
phosphoserine phosphatase SerB; K01079 phosphoserine phosphatase [EC:3.1.3.3]
Phosphoserine phosphatase SerB n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UQH4_9SPHN
Phosphoserine phosphatase SerB {ECO:0000313|EMBL:ENY80690.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1868_curated_2
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

530..1450
DNA (921bp) protein (307aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase; K00791 tRNA dimethylallyltransferase [EC:2.5.1.75]
tRNA dimethylallyltransferase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WB63_9SPHN
SCNpilot_expt_500_bf_scaffold_1868_curated_3
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1547..3301
DNA (1755bp) protein (585aa)
acetolactate synthase large subunit; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
Acetolactate synthase large subunit n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VZQ0_9SPHN
Acetolactate synthase large subunit {ECO:0000313|EMBL:ENY80692.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1868_curated_4
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3450..3965
DNA (516bp) protein (172aa)
Acetolactate synthase 3 regulatory subunit {ECO:0000313|EMBL:ENY80693.1}; EC=2.2.1.6 {ECO:0000313|EMBL:ENY80693.1};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
ilvH; acetolactate synthase 3 regulatory subunit; K01653 acetolactate synthase I/III small subunit [EC:2.2.1.6]
Acetolactate synthase 3 regulatory subunit n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WAJ6_9SPHN
SCNpilot_expt_500_bf_scaffold_1868_curated_5
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4092..5111
DNA (1020bp) protein (340aa)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
ketol-acid reductoisomerase; K00053 ketol-acid reductoisomerase [EC:1.1.1.86]
Ketol-acid reductoisomerase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UQV9_9SPHN
SCNpilot_expt_500_bf_scaffold_1868_curated_6
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5176..5868)
DNA (693bp) protein (231aa)
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCNpilot_expt_500_bf_scaffold_1868_curated_7
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6337..6945
DNA (609bp) protein (203aa)
ATP-dependent dethiobiotin synthetase BioD {ECO:0000256|HAMAP-Rule:MF_00336}; EC=6.3.3.3 {ECO:0000256|HAMAP-Rule:MF_00336};; DTB synthetase {ECO:0000256|HAMAP-Rule:MF_00336}; Dethiobiotin synthase {ECO:0000256|HAMAP-Rule:MF_00336}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
bioD; dithiobiotin synthetase; K01935 dethiobiotin synthetase [EC:6.3.3.3]
ATP-dependent dethiobiotin synthetase BioD n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WB67_9SPHN
SCNpilot_expt_500_bf_scaffold_1868_curated_8
Mesorhizobium sp. LSJC264A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6953..7900)
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. LSJC264A00 RepID=V7ERU7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESX08034.1}; TaxID=1287321 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC264A00.;"
SCNpilot_expt_500_bf_scaffold_1868_curated_9
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8360..8776
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WAK0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY80698.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1868_curated_10
unknown

Not on your lists

comp(8968..10371)
DNA (1404bp) protein (468aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1868_curated_11
unknown

Not on your lists

comp(10471..11073)
DNA (603bp) protein (201aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1868_curated_12
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11366..12199
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UQW3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY80699.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1868_curated_13
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12292..12933
DNA (642bp) protein (214aa)
YceI protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UQI3_9SPHN
YceI protein {ECO:0000313|EMBL:ENY80700.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
YceI protein
SCNpilot_expt_500_bf_scaffold_1868_curated_14
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13015..13416
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WB71_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY80701.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1868_curated_15
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13684..15348
DNA (1665bp) protein (555aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_00572}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
2-isopropylmalate synthase; K01649 2-isopropylmalate synthase [EC:2.3.3.13]
2-isopropylmalate synthase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VZQ7_9SPHN
SCNpilot_expt_500_bf_scaffold_1868_curated_16
Leisingera methylohalidivorans, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15368..16990)
DNA (1623bp) protein (541aa)
UPI0003D6C09D related cluster n=1 Tax=unknown RepID=UPI0003D6C09D
Uncharacterized protein {ECO:0000313|EMBL:AHD03020.1}; TaxID=999552 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera methylohalidivorans DSM 14336.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1868_curated_17
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17149..18156
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UQI8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY80705.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1868_curated_18
Sphingobium indicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18202..18831)
DNA (630bp) protein (210aa)
Putative chemotaxis transducer n=1 Tax=Sphingobium indicum B90A RepID=I5BF37_9SPHN
Putative chemotaxis transducer {ECO:0000313|EMBL:EIM68189.1}; TaxID=861109 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium indicum B90A.;"
putative chemotaxis transducer; K03406 methyl-accepting chemotaxis protein
SCNpilot_expt_500_bf_scaffold_1868_curated_19
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18921..19541
DNA (621bp) protein (207aa)
Acetyltransferase (GNAT) domain n=1 Tax=uncultured organism RepID=T1W8D3_9ZZZZ
N-acetyltransferase GCN5
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_expt_500_bf_scaffold_1868_curated_20
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19695..19901
DNA (207bp) protein (69aa)
Cold-shock DNA-binding protein family n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GT29_SPHAL
Cold-shock DNA-binding protein family protein {ECO:0000313|EMBL:KGB58266.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family)
SCNpilot_expt_500_bf_scaffold_1868_curated_21
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19922..20128
DNA (207bp) protein (69aa)
Translation initiation factor IF-1 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VZR2_9SPHN
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
infA; translation initiation factor IF-1; K02518 translation initiation factor IF-1
SCNpilot_expt_500_bf_scaffold_1868_curated_22
unknown

Not on your lists

20209..20376
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1868_curated_23
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20414..20635
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WAK6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY80708.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1868_curated_24
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20674..21105)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UQX2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY80709.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1868_curated_25
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21210..21662
DNA (453bp) protein (151aa)
MarR family transcriptional regulator n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UQJ1_9SPHN
MarR family transcriptional regulator {ECO:0000313|EMBL:ENY80710.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
MarR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_1868_curated_26
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21675..21923)
DNA (249bp) protein (83aa)
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_expt_500_bf_scaffold_1868_curated_27
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22301..23278
DNA (978bp) protein (326aa)
2-nitropropane dioxygenase; K00459 nitronate monooxygenase [EC:1.13.12.16]
2-nitropropane dioxygenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WB80_9SPHN
2-nitropropane dioxygenase {ECO:0000313|EMBL:ENY80711.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1868_curated_28
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23275..23748)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VZR6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AJA09351.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
SCNpilot_expt_500_bf_scaffold_1868_curated_29
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23748..24545)
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WAK9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY80713.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1868_curated_30
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24626..26587)
DNA (1962bp) protein (654aa)
Probable potassium transport system protein kup n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UQX5_9SPHN
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
K+ potassium transporter; K03549 KUP system potassium uptake protein
Displaying items 1-30 of 38 in total

View Taxonomy