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SCNpilot_expt_500_bf_scaffold_1864_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1864_curated_1
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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490..1227
DNA (738bp) protein (246aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI00036ABE7C
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66385.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_500_bf_scaffold_1864_curated_2
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1289..1852)
DNA (564bp) protein (188aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
pseudouridine synthase, Rsu; K06181 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
Pseudouridine synthase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W904_9SPHN
SCNpilot_expt_500_bf_scaffold_1864_curated_3
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2001..3833)
DNA (1833bp) protein (611aa)
GTP-binding protein TypA n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UP94_9SPHN
GTP-binding protein TypA {ECO:0000313|EMBL:ENY80154.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
GTP-binding protein TypA; K06207 GTP-binding protein
SCNpilot_expt_500_bf_scaffold_1864_curated_4
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3996..5726
DNA (1731bp) protein (577aa)
Trypsin-like serine protease n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UNZ2_9SPHN
Trypsin-like serine protease {ECO:0000313|EMBL:ENY80155.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
trypsin-like serine protease
SCNpilot_expt_500_bf_scaffold_1864_curated_5
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5716..6375)
DNA (660bp) protein (220aa)
Purine phosphorylase family protein 1 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W9N8_9SPHN
Purine phosphorylase family protein 1 {ECO:0000313|EMBL:ENY80156.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
purine phosphorylase family protein 1
SCNpilot_expt_500_bf_scaffold_1864_curated_6
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6480..7439
DNA (960bp) protein (320aa)
Putative cytochrome oxidase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VY37_9SPHN
Putative cytochrome oxidase {ECO:0000313|EMBL:ENY80157.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
putative cytochrome oxidase; K14347 solute carrier family 10 (sodium/bile acid cotransporter), member 7
SCNpilot_expt_500_bf_scaffold_1864_curated_7
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7513..8724
DNA (1212bp) protein (404aa)
Toxic anion resistance n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W909_9SPHN
Toxic anion resistance {ECO:0000313|EMBL:ENY80158.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
toxic anion resistance
SCNpilot_expt_500_bf_scaffold_1864_curated_8
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8732..9457
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UP99_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY80159.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1864_curated_9
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9464..10204)
DNA (741bp) protein (247aa)
Diguanylate cyclase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UNZ6_9SPHN
Diguanylate cyclase {ECO:0000313|EMBL:ENY80160.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
diguanylate cyclase
SCNpilot_expt_500_bf_scaffold_1864_curated_10
unknown

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10519..11244
DNA (726bp) protein (242aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1864_curated_11
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11474..12487)
DNA (1014bp) protein (338aa)
Putative esterase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W9P5_9SPHN
Putative esterase {ECO:0000313|EMBL:ENY80161.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
putative esterase
SCNpilot_expt_500_bf_scaffold_1864_curated_12
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12534..14174)
DNA (1641bp) protein (547aa)
Tannase and feruloyl esterase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VY42_9SPHN
Tannase and feruloyl esterase {ECO:0000313|EMBL:ENY80162.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
tannase
SCNpilot_expt_500_bf_scaffold_1864_curated_13
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14248..14799)
DNA (552bp) protein (184aa)
Major facilitator transporter n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W917_9SPHN
Major facilitator transporter {ECO:0000313|EMBL:ENY80163.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
major facilitator transporter
Displaying 13 items

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