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SCNpilot_expt_500_bf_scaffold_368_curated

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_368_curated_1
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..326
DNA (324bp) protein (108aa)
TonB domain protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WHB1_9SPHN
TonB domain protein {ECO:0000313|EMBL:ENY83058.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_368_curated_2
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

514..1860
DNA (1347bp) protein (449aa)
ATP-dependent Clp protease ATP-binding subunit ClpA n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UXU0_9SPHN
ATP-dependent Clp protease ATP-binding subunit ClpA {ECO:0000313|EMBL:ENY83059.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
ATPase; K03694 ATP-dependent Clp protease ATP-binding subunit ClpA
SCNpilot_expt_500_bf_scaffold_368_curated_3
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1812..2810
DNA (999bp) protein (333aa)
ATP-dependent Clp protease ATP-binding subunit ClpA n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UXU0_9SPHN
ATP-dependent Clp protease ATP-binding subunit ClpA {ECO:0000313|EMBL:ENY83059.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
ATPase; K03694 ATP-dependent Clp protease ATP-binding subunit ClpA
SCNpilot_expt_500_bf_scaffold_368_curated_4
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2847..3734
DNA (888bp) protein (296aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
methionine aminopeptidase; K01265 methionyl aminopeptidase [EC:3.4.11.18]
Methionine aminopeptidase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UX93_9SPHN
SCNpilot_expt_500_bf_scaffold_368_curated_5
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3846..6026
DNA (2181bp) protein (727aa)
Pyrrolo-quinoline quinone; K00114 alcohol dehydrogenase (cytochrome c) [EC:1.1.2.8]
Pyrrolo-quinoline quinone n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WHV2_9SPHN
Pyrrolo-quinoline quinone {ECO:0000313|EMBL:ENY83061.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_368_curated_6
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6256..6594
DNA (339bp) protein (113aa)
Nitrogen regulatory protein P-II n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W6A0_9SPHN
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:ENY83062.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
nitrogen regulatory protein P-II; K04751 nitrogen regulatory protein P-II 1
SCNpilot_expt_500_bf_scaffold_368_curated_7
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6667..8079
DNA (1413bp) protein (471aa)
Glutamine synthetase {ECO:0000256|RuleBase:RU004356}; EC=6.3.1.2 {ECO:0000256|RuleBase:RU004356};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
glutamine synthetase, type I; K01915 glutamine synthetase [EC:6.3.1.2]
Glutamine synthetase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WHB7_9SPHN
SCNpilot_expt_500_bf_scaffold_368_curated_8
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8158..8820)
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UXU7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY83064.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_368_curated_9
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8820..9029)
DNA (210bp) protein (70aa)
XRE family transcriptional regulator n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UXA0_9SPHN
XRE family transcriptional regulator {ECO:0000313|EMBL:ENY83065.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
XRE family transcriptional regulator; K07729 putative transcriptional regulator
SCNpilot_expt_500_bf_scaffold_368_curated_10
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9208..10521
DNA (1314bp) protein (438aa)
Peptidase M20 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WHV7_9SPHN
Peptidase M20 {ECO:0000313|EMBL:ENY83066.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
peptidase M20
SCNpilot_expt_500_bf_scaffold_368_curated_11
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10617..12053
DNA (1437bp) protein (479aa)
aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
Aldehyde dehydrogenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W6A6_9SPHN
Aldehyde dehydrogenase {ECO:0000313|EMBL:ENY83067.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_368_curated_12
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12191..13423
DNA (1233bp) protein (411aa)
argJ; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase; K00620 glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
Arginine biosynthesis bifunctional protein ArgJ n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WHC5_9SPHN
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_368_curated_13
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13401..16433)
DNA (3033bp) protein (1011aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
UvrD/REP helicase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UXA5_9SPHN
UvrD/REP helicase
SCNpilot_expt_500_bf_scaffold_368_curated_14
unknown

Not on your lists

16559..17260
DNA (702bp) protein (234aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_368_curated_15
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17203..20232)
DNA (3030bp) protein (1010aa)
Helicase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WHW3_9SPHN
Helicase {ECO:0000313|EMBL:ENY83071.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
helicase
SCNpilot_expt_500_bf_scaffold_368_curated_16
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20246..20992)
DNA (747bp) protein (249aa)
nucleotidyl transferase; K00966 mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
Nucleotidyl transferase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W6B4_9SPHN
Nucleotidyl transferase {ECO:0000313|EMBL:ENY83072.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_368_curated_17
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20997..21989)
DNA (993bp) protein (331aa)
Aminoglycoside phosphotransferase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WHD1_9SPHN
Aminoglycoside phosphotransferase {ECO:0000313|EMBL:ENY83073.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
aminoglycoside phosphotransferase; K07102
SCNpilot_expt_500_bf_scaffold_368_curated_18
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21974..22423)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UXV9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY83074.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein; K06925 UPF0079 ATP-binding protein
SCNpilot_expt_500_bf_scaffold_368_curated_19
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22685..25048)
DNA (2364bp) protein (788aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
PAS/PAC sensor signal transduction histidine kinase; K00936 [EC:2.7.3.-]
PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UXB2_9SPHN
SCNpilot_expt_500_bf_scaffold_368_curated_20
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25225..28302)
DNA (3078bp) protein (1026aa)
TonB dependent receptor n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WHW8_9SPHN
TonB dependent receptor {ECO:0000313|EMBL:ENY83076.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
TonB-dependent outer membrane receptor
SCNpilot_expt_500_bf_scaffold_368_curated_21
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28461..29924)
DNA (1464bp) protein (488aa)
Adenosylhomocysteinase {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548}; EC=3.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548};; S-adenosyl-L-homocysteine hydrolase {ECO:0000256|HAMAP-Rule:MF_00563}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
S-adenosyl-L-homocysteine hydrolase (EC:3.3.1.1); K01251 adenosylhomocysteinase [EC:3.3.1.1]
Adenosylhomocysteinase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W6C0_9SPHN
SCNpilot_expt_500_bf_scaffold_368_curated_22
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30330..30725
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WHD9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY83078.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_368_curated_23
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30751..31365)
DNA (615bp) protein (205aa)
UPF0301 protein EBMC1_03225 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UXW7_9SPHN
UPF0301 protein EBMC1_03225 {ECO:0000256|HAMAP-Rule:MF_00758}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein; K07735 putative transcriptional regulator
SCNpilot_expt_500_bf_scaffold_368_curated_24
Zea mays, Zea, Poales, commelinids, Streptophyta, Viridiplantae

Not on your lists

comp(31566..31820)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Zea mays RepID=C0P8E9_MAIZE
Uncharacterized protein {ECO:0000313|EMBL:ACN29265.1}; TaxID=4577 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogoneae; Zea.;" source="Zea mays (Maize).;"
SCNpilot_expt_500_bf_scaffold_368_curated_25
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32048..33532
DNA (1485bp) protein (495aa)
AMP nucleosidase {ECO:0000256|HAMAP-Rule:MF_01932}; EC=3.2.2.4 {ECO:0000256|HAMAP-Rule:MF_01932};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
AMP nucleosidase; K01241 AMP nucleosidase [EC:3.2.2.4]
AMP nucleosidase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WHX3_9SPHN
SCNpilot_expt_500_bf_scaffold_368_curated_26
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33529..34302
DNA (774bp) protein (258aa)
3-oxoacyl-ACP reductase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W6C6_9SPHN
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:ENY83082.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
3-oxoacyl-ACP reductase
SCNpilot_expt_500_bf_scaffold_368_curated_27
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34309..34791)
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WHE6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY83083.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_368_curated_28
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34840..35166
DNA (327bp) protein (109aa)
Putative ArsR family transcriptional regulator n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UXX3_9SPHN
Putative ArsR family transcriptional regulator {ECO:0000313|EMBL:ENY83084.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
ArsR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_368_curated_29
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35213..36319)
DNA (1107bp) protein (369aa)
Fatty acid desaturase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UXC2_9SPHN
Fatty acid desaturase {ECO:0000313|EMBL:ENY83085.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
fatty acid desaturase
SCNpilot_expt_500_bf_scaffold_368_curated_30
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36438..37607
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WHX9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY83086.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
Displaying items 1-30 of 49 in total

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