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SCNpilot_expt_500_bf_scaffold_2188_curated_16

Organism: scnpilot_dereplicated_Sphingopyxis_1

near complete RP 50 / 55 BSCG 49 / 51 ASCG 10 / 38
Location: comp(14642..14986)

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingo similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 114.0
  • Bit_score: 223
  • Evalue 1.50e-55
DNA-directed RNA polymerase subunit omega; K03060 DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] similarity KEGG
DB: KEGG
  • Identity: 92.1
  • Coverage: 114.0
  • Bit_score: 210
  • Evalue 2.90e-52
DNA-directed RNA polymerase subunit omega n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USM5_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 114.0
  • Bit_score: 223
  • Evalue 1.10e-55

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Taxonomy

Sphingopyxis sp. MC1 → Sphingopyxis → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 345
ATGGCCCGCGTTACCGTCGAAGATTGCGTCGACAAAGTTCCCAACCGTTTCGATCTGGTGCTGCTTTCGGCGCATCGCGCCCGCGAAATTTCGGGCGGCTCGGAGCTGACCATCGATCGCGATCGCGACAAGAACCCGGTCGTCGCGCTGCGCGAGATCGCCGAACAGACGATCCGCCCCGTCGATCTCAAGGACGCGCTCACCGGATCGCTGCAGAAGGTTGTCGTCGACGATGACGATACGCCCGATGAAATCAGCTCGATCGCGCGCTCGGCCGAGGCGCTTCGCCTCACCGCGGCTGCGCCGCCGCGCAGCCCTGCGGGCGGCGGTGCCGATTTCGACTAA
PROTEIN sequence
Length: 115
MARVTVEDCVDKVPNRFDLVLLSAHRAREISGGSELTIDRDRDKNPVVALREIAEQTIRPVDLKDALTGSLQKVVVDDDDTPDEISSIARSAEALRLTAAAPPRSPAGGGADFD*