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SCNpilot_expt_500_bf_scaffold_2188_curated

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2188_curated_1
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1230)
DNA (1230bp) protein (410aa)
O-antigen polymerase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USL1_9SPHN
O-antigen polymerase {ECO:0000313|EMBL:ENY81465.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
O-antigen polymerase family protein
SCNpilot_expt_500_bf_scaffold_2188_curated_2
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1330..2052)
DNA (723bp) protein (241aa)
Metallophosphoesterase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WDA3_9SPHN
Metallophosphoesterase {ECO:0000313|EMBL:ENY81466.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
metallophosphoesterase
SCNpilot_expt_500_bf_scaffold_2188_curated_3
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2416..3486
DNA (1071bp) protein (357aa)
UDP-N-acetylglucosamine 2-epimerase; K01791 UDP-N-acetylglucosamine 2-epimerase [EC:5.1.3.14]
UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W1V0_9SPHN
UDP-N-acetylglucosamine 2-epimerase {ECO:0000313|EMBL:ENY81467.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_2188_curated_4
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3476..4771
DNA (1296bp) protein (432aa)
UDP-glucose/GDP-mannose dehydrogenase; K02472 UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.-]
UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WCH8_9SPHN
UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase {ECO:0000313|EMBL:ENY81468.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_2188_curated_5
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4820..5626
DNA (807bp) protein (269aa)
phosphomannose isomerase-like protein; K01809 mannose-6-phosphate isomerase [EC:5.3.1.8]
Phosphomannose isomerase-like protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UT16_9SPHN
Phosphomannose isomerase-like protein {ECO:0000313|EMBL:ENY81469.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_2188_curated_6
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5676..6242
DNA (567bp) protein (189aa)
ATP-dependent protease subunit HslV {ECO:0000256|HAMAP-Rule:MF_00248, ECO:0000256|SAAS:SAAS00019556}; EC=3.4.25.2 {ECO:0000256|HAMAP-Rule:MF_00248, ECO:0000256|SAAS:SAAS00019493};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
ATP-dependent protease peptidase subunit; K01419 ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
ATP-dependent protease subunit HslV n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USL5_9SPHN
SCNpilot_expt_500_bf_scaffold_2188_curated_7
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6247..7548
DNA (1302bp) protein (434aa)
ATP-dependent protease ATP-binding subunit HslU n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WDA9_9SPHN
ATP-dependent protease ATPase subunit HslU {ECO:0000256|SAAS:SAAS00089650}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hslU; ATP-dependent protease ATP-binding subunit HslU; K03667 ATP-dependent HslUV protease ATP-binding subunit HslU
SCNpilot_expt_500_bf_scaffold_2188_curated_8
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7659..7832)
DNA (174bp) protein (58aa)
UPF0391 membrane protein EBMC1_10469 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W1V5_9SPHN
UPF0391 membrane protein EBMC1_10469 {ECO:0000256|HAMAP-Rule:MF_01361}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
transmembrane protein
SCNpilot_expt_500_bf_scaffold_2188_curated_9
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8088..8960
DNA (873bp) protein (291aa)
XRE family transcriptional regulator n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WCI2_9SPHN
XRE family transcriptional regulator {ECO:0000313|EMBL:ENY81473.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
XRE family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_2188_curated_10
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9683..9982
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UT22_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY81474.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2188_curated_11
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9936..10928
DNA (993bp) protein (331aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
tRNA(Ile)-lysidine synthetase-like protein; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
tRNA(Ile)-lysidine synthase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USM1_9SPHN
SCNpilot_expt_500_bf_scaffold_2188_curated_12
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11031..12974
DNA (1944bp) protein (648aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
ATP-dependent metalloprotease FtsH; K03798 cell division protease FtsH [EC:3.4.24.-]
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WDB5_9SPHN
SCNpilot_expt_500_bf_scaffold_2188_curated_13
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13048..13419
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W1W0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY81477.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2188_curated_14
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13454..13933
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WCI6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY81478.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2188_curated_15
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13959..14564
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UT29_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY81479.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2188_curated_16
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14642..14986)
DNA (345bp) protein (115aa)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingo
DNA-directed RNA polymerase subunit omega; K03060 DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
DNA-directed RNA polymerase subunit omega n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USM5_9SPHN
SCNpilot_expt_500_bf_scaffold_2188_curated_17
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15236..16276
DNA (1041bp) protein (347aa)
Phospholipase D/transphosphatidylase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WDC2_9SPHN
Phospholipase D/transphosphatidylase {ECO:0000313|EMBL:ENY81481.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
phospholipase D/transphosphatidylase
SCNpilot_expt_500_bf_scaffold_2188_curated_18
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16281..16919)
DNA (639bp) protein (213aa)
Type 12 methyltransferase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W1W4_9SPHN
Type 12 methyltransferase {ECO:0000313|EMBL:ENY81482.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
type 12 methyltransferase
SCNpilot_expt_500_bf_scaffold_2188_curated_19
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17046..18332
DNA (1287bp) protein (429aa)
Major facilitator superfamily transporter n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WCI9_9SPHN
Major facilitator superfamily transporter {ECO:0000313|EMBL:ENY81483.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
major facilitator superfamily transporter
SCNpilot_expt_500_bf_scaffold_2188_curated_20
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18349..20673)
DNA (2325bp) protein (775aa)
ATPase AAA n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UT35_9SPHN
ATPase AAA {ECO:0000313|EMBL:ENY81484.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
ATPase AAA; K13525 transitional endoplasmic reticulum ATPase
SCNpilot_expt_500_bf_scaffold_2188_curated_21
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20823..21701
DNA (879bp) protein (293aa)
LysR family transcriptional regulator n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USN1_9SPHN
LysR family transcriptional regulator {ECO:0000313|EMBL:ENY81485.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
LysR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_2188_curated_22
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21712..22794)
DNA (1083bp) protein (361aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WDC8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY81486.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2188_curated_23
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22989..23594)
DNA (606bp) protein (202aa)
Uncharacterized protein {ECO:0000313|EMBL:EZP57465.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
SCNpilot_expt_500_bf_scaffold_2188_curated_24
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23602..24012)
DNA (411bp) protein (137aa)
Integrase/resolvase recombinase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USP2_9SPHN
Integrase/resolvase recombinase {ECO:0000313|EMBL:ENY81495.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_2188_curated_25
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24280..24423
DNA (144bp) protein (48aa)
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_expt_500_bf_scaffold_2188_curated_26
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24413..24727)
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WDE0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY81496.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2188_curated_27
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24734..25678)
DNA (945bp) protein (315aa)
peptidyl-prolyl cis-trans isomerase; K01802 peptidylprolyl isomerase [EC:5.2.1.8]
Putative secreted peptidyl prolyl cis-trans isomerase, cyclophilin type n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W1X6_9SPHN
Putative secreted peptidyl prolyl cis-trans isomerase, cyclophilin type {ECO:0000313|EMBL:ENY81497.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_2188_curated_28
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26639..27481)
DNA (843bp) protein (281aa)
resolvase n=1 Tax=Sphingobium xenophagum RepID=UPI0003823D04
Resolvase {ECO:0000313|EMBL:KHK92646.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
DNA integration/recombination/inversion protein
SCNpilot_expt_500_bf_scaffold_2188_curated_29
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28697..29500
DNA (804bp) protein (268aa)
Uncharacterized protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AAX9_RHIFH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCE94759.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_expt_500_bf_scaffold_2188_curated_30
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29502..30923)
DNA (1422bp) protein (474aa)
Putative phage terminase-like protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JG21_HYPSM
phage terminase-like protein
Putative phage terminase-like protein {ECO:0000313|EMBL:CCB66722.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Displaying items 1-30 of 33 in total

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