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scnpilot_expt_500_bf_sub50_scaffold_1_curated

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Displaying items 1-30 of 254 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_500_bf_sub50_scaffold_1_curated_1
Desulfurispirillum indicum, Desulfurispirillum, Chrysiogenales, Chrysiogenetes, Chrysiogenetes, Bacteria

Not on your lists

183..503
DNA (321bp) protein (107aa)
Small multidrug resistance protein n=1 Tax=Desulfurispirillum indicum (strain ATCC BAA-1389 / S5) RepID=E6W6M3_DESIS
small multidrug resistance protein; K11741 quaternary ammonium compound-resistance protein SugE
Small multidrug resistance protein {ECO:0000313|EMBL:ADU65023.1}; TaxID=653733 species="Bacteria; Chrysiogenetes; Chrysiogenales; Chrysiogenaceae; Desulfurispirillum.;" source="Desulfurispirillum indicum (strain ATCC BAA-1389 / S5).;"
scnpilot_expt_500_bf_sub50_scaffold_1_curated_2
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

841..1470
DNA (630bp) protein (210aa)
deaminase n=1 Tax=Thiobacillus thioparus RepID=UPI00037EDE2F
bifunctional deaminase-reductase domain-containing protein
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
scnpilot_expt_500_bf_sub50_scaffold_1_curated_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1624..2103
DNA (480bp) protein (160aa)
Putative 3-demethylubiquinone-9 3-methyltransferase n=1 Tax=Variovorax paradoxus B4 RepID=T1XJG9_VARPD
putative 3-demethylubiquinone-9 3-methyltransferase
Putative 3-demethylubiquinone-9 3-methyltransferase {ECO:0000313|EMBL:AGU52718.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
scnpilot_expt_500_bf_sub50_scaffold_1_curated_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2276..2674
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036F934D
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_500_bf_sub50_scaffold_1_curated_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2724..3296
DNA (573bp) protein (191aa)
deaminase n=1 Tax=Thiobacillus thioparus RepID=UPI00037E9092
bifunctional deaminase-reductase domain-containing protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_500_bf_sub50_scaffold_1_curated_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3544..5046
DNA (1503bp) protein (501aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036A21D4
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_500_bf_sub50_scaffold_1_curated_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5129..7231)
DNA (2103bp) protein (701aa)
diguanylate cyclase id=12498631 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
diguanylate cyclase
Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain {ECO:0000313|EMBL:AAZ97364.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_expt_500_bf_sub50_scaffold_1_curated_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7457..8119
DNA (663bp) protein (221aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000378C4CA
phosphoesterase PA-phosphatase-like protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_500_bf_sub50_scaffold_1_curated_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8138..8968)
DNA (831bp) protein (277aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000379A71A
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_expt_500_bf_sub50_scaffold_1_curated_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9187..10059
DNA (873bp) protein (291aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037EF68D
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_500_bf_sub50_scaffold_1_curated_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10078..10992
DNA (915bp) protein (305aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037406A5
diguanylate cyclase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_500_bf_sub50_scaffold_1_curated_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11110..12063
DNA (954bp) protein (318aa)
cytochrome C biogenesis protein n=1 Tax=Thiobacillus thioparus RepID=UPI000371FF4C
heat shock protein DnaJ domain-containing protein; K05516 curved DNA-binding protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_500_bf_sub50_scaffold_1_curated_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12067..12384
DNA (318bp) protein (106aa)
MerR family transcriptional regulator n=1 Tax=Thiobacillus thioparus RepID=UPI00038278E3
MerR family transcriptional regulator
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_500_bf_sub50_scaffold_1_curated_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12381..13370)
DNA (990bp) protein (330aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037ACD55
putative NAD/FAD-dependent oxidoreductase; K06955
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_expt_500_bf_sub50_scaffold_1_curated_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13530..13958)
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003764459
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_500_bf_sub50_scaffold_1_curated_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13961..15322)
DNA (1362bp) protein (454aa)
putative integral membrane protein; K06902 MFS transporter, UMF1 family id=12494588 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
putative integral membrane protein; K06902 MFS transporter, UMF1 family
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_expt_500_bf_sub50_scaffold_1_curated_17
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15322..17118)
DNA (1797bp) protein (599aa)
metal ABC transporter permease n=1 Tax=Thiobacillus thioparus RepID=UPI000381B763
ABC-type transport system ATPase; K06147 ATP-binding cassette, subfamily B, bacterial
ABC-type transport system ATPase {ECO:0000313|EMBL:AAZ97226.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_expt_500_bf_sub50_scaffold_1_curated_18
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17166..17549
DNA (384bp) protein (128aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037E22B7
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_500_bf_sub50_scaffold_1_curated_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17556..18716
DNA (1161bp) protein (387aa)
succinyl-diaminopimelate desuccinylase (EC:3.5.1.18); K01439 succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
succinyl-diaminopimelate desuccinylase n=1 Tax=Thiobacillus thioparus RepID=UPI00036F8289
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_expt_500_bf_sub50_scaffold_1_curated_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18713..19639
DNA (927bp) protein (309aa)
N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (EC:2.1.1.72); K07320 putative adenine-specific DNA-methyltransferase [EC:2.1.1.72]
N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00036A5A6D
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_expt_500_bf_sub50_scaffold_1_curated_21
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19661..21889)
DNA (2229bp) protein (743aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037B2E3A
periplasmic sensor diguanylate cyclase/phosphodiesterase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_expt_500_bf_sub50_scaffold_1_curated_22
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21986..22447)
DNA (462bp) protein (154aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000374E2D0
hoxW; hydrogenase maturation protease
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_500_bf_sub50_scaffold_1_curated_23
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22444..23742)
DNA (1299bp) protein (433aa)
Ni/Fe hydrogenase subunit alpha n=1 Tax=Thiobacillus thioparus RepID=UPI00036FFE14
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_expt_500_bf_sub50_scaffold_1_curated_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23735..24538)
DNA (804bp) protein (268aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003664A1E
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_expt_500_bf_sub50_scaffold_1_curated_25
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24538..25386)
DNA (849bp) protein (283aa)
Ni/Fe hydrogenase subunit gamma n=1 Tax=Thiobacillus thioparus RepID=UPI000374B60C
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_500_bf_sub50_scaffold_1_curated_26
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25383..26501)
DNA (1119bp) protein (373aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000367CCBF
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_500_bf_sub50_scaffold_1_curated_27
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26674..27339
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000363A1D9
CmpX protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_500_bf_sub50_scaffold_1_curated_28
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27379..28269)
DNA (891bp) protein (297aa)
ribosomal large subunit pseudouridine synthase B (EC:5.4.99.-); K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] id=12493951 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
ribosomal large subunit pseudouridine synthase B (EC:5.4.99.-); K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_500_bf_sub50_scaffold_1_curated_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28272..28964)
DNA (693bp) protein (231aa)
Predicted transcriptional regulator id=1357074 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
condensin subunit ScpB; K06024 segregation and condensation protein B
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_expt_500_bf_sub50_scaffold_1_curated_30
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28945..29781)
DNA (837bp) protein (279aa)
segregation and condensation protein A n=1 Tax=Thiobacillus denitrificans RepID=UPI00036CBED9
condensin subunit ScpA; K05896 segregation and condensation protein A
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Displaying items 1-30 of 254 in total

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