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SCNpilot_expt_500_p_scaffold_465

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Displaying items 1-30 of 40 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_465_1
unknown

Not on your lists

comp(1..150)
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_465_2
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(709..1614)
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0Q2U5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCM78552.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_465_3
unknown

Not on your lists

comp(1837..2484)
DNA (648bp) protein (216aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_465_4
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2465..2989)
DNA (525bp) protein (175aa)
Putative cytoplasmic protein n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q099M1_STIAD
Putative cytoplasmic protein {ECO:0000313|EMBL:EAU68445.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_465_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3012..5789)
DNA (2778bp) protein (926aa)
ATPase AAA n=1 Tax=Variovorax paradoxus RepID=UPI00036BB7E0
type VI secretion ATPase, clpv1 family; K11907 type VI secretion system protein VasG
Type VI secretion ATPase, ClpV1 family {ECO:0000313|EMBL:ADU34788.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_p_scaffold_465_6
Pseudomonas sp. 21, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5883..6965)
DNA (1083bp) protein (361aa)
hypothetical protein n=1 Tax=Pseudomonas nitroreducens RepID=UPI0002DD1B3D
Uncharacterized protein {ECO:0000313|EMBL:KJK01991.1}; TaxID=1619948 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 21.;"
phaF; polyhydroxyalkanoate synthesis protein PhaF
SCNpilot_expt_500_p_scaffold_465_7
Thiorhodococcus drewsii, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7014..8081)
DNA (1068bp) protein (356aa)
Type VI secretion protein, VC_A0111 family n=1 Tax=Thiorhodococcus drewsii AZ1 RepID=G2E1X4_9GAMM
Type VI secretion protein, VC_A0111 family {ECO:0000313|EMBL:EGV31182.1}; TaxID=765913 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus drewsii AZ1.;"
sciB; hypothetical protein; K11895 type VI secretion system protein ImpH
SCNpilot_expt_500_p_scaffold_465_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8078..9955)
DNA (1878bp) protein (626aa)
Type VI secretion protein, VC_A0110 family n=1 Tax=Variovorax paradoxus B4 RepID=T1X424_VARPD
type VI secretion protein, VC_A0110 family
Type VI secretion protein, VC_A0110 family {ECO:0000313|EMBL:AGU47363.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_p_scaffold_465_9
Kosakonia radicincitans, Kosakonia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9961..10482)
DNA (522bp) protein (174aa)
Lysozyme family protein n=1 Tax=Enterobacter radicincitans DSM 16656 RepID=J2ITS0_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:KDE35754.1}; TaxID=1455607 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Kosakonia.;" source="Kosakonia radicincitans UMEnt01/12.;"
type VI secretion system lysozyme-related protein
SCNpilot_expt_500_p_scaffold_465_10
Candidatus Accumulibacter sp. SK-12, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10475..11296)
DNA (822bp) protein (274aa)
Uncharacterized protein n=1 Tax=Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601) RepID=Q0FRD0_PELBH
Protein of avirulence locus involved in temperature-dependent protein secretion {ECO:0000313|EMBL:EXI64475.1}; TaxID=1454001 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-12.;"
sciE; hypothetical protein; K11898 type VI secretion system protein ImpE
SCNpilot_expt_500_p_scaffold_465_11
Burkholderia phymatum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11414..11965)
DNA (552bp) protein (184aa)
Type VI secretion system effector, Hcp1 family n=1 Tax=Burkholderia phymatum (strain DSM 17167 / STM815) RepID=B2JW42_BURP8
Hcp1 family type VI secretion system effector; K11903 type VI secretion system secreted protein Hcp
Type VI secretion system effector, Hcp1 family {ECO:0000313|EMBL:ACC75169.1}; TaxID=391038 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phymatum (strain DSM 17167 / STM815).;"
SCNpilot_expt_500_p_scaffold_465_12
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12065..13561)
DNA (1497bp) protein (499aa)
Type VI secretion protein, EvpB/VC_A0108 family n=2 Tax=Delftia RepID=A9BLJ7_DELAS rbh
EvpB family type VI secretion protein; K11900 type VI secretion system protein ImpC rbh
Uncharacterized protein {ECO:0000313|EMBL:KFJ12929.1}; TaxID=80866 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (Pseudomonas acidovorans) (Comamonas acidovorans).;"
SCNpilot_expt_500_p_scaffold_465_13
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13588..14136)
DNA (549bp) protein (183aa)
Uncharacterized protein ImpB n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH45_9PROT
Uncharacterized protein ImpB {ECO:0000313|EMBL:CCU62621.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein; K11901 type VI secretion system protein ImpB
SCNpilot_expt_500_p_scaffold_465_14
Aquabacterium sp. NJ1, Aquabacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14295..15320)
DNA (1026bp) protein (342aa)
type VI secretion protein ImpA n=1 Tax=Acidovorax avenae RepID=UPI0002EFAD05
Uncharacterized protein {ECO:0000313|EMBL:KGM40351.1}; TaxID=1538295 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Aquabacterium.;" source="Aquabacterium sp. NJ1.;"
type VI secretion-associated protein, ImpA family
SCNpilot_expt_500_p_scaffold_465_15
Pseudomonas sp. 21, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15381..15830)
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Pseudomonas nitroreducens RepID=UPI0002D7CA67
Uncharacterized protein {ECO:0000313|EMBL:KJK02287.1}; TaxID=1619948 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 21.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_465_16
Delftia sp. RIT313, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16036..18930)
DNA (2895bp) protein (965aa)
Serine/threonine protein kinase n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6ARE7_DELSC rbh
Serine/threonine protein kinase {ECO:0000313|EMBL:EZP47605.1}; TaxID=1468410 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. RIT313.;"
serine/threonine protein kinase rbh
SCNpilot_expt_500_p_scaffold_465_17
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19424..21397
DNA (1974bp) protein (658aa)
Regulatory protein n=1 Tax=Thauera phenylacetica B4P RepID=N6YVI3_9RHOO
Regulatory protein {ECO:0000313|EMBL:ENO95570.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
FHA domain containing protein; K07169 FHA domain-containing protein
SCNpilot_expt_500_p_scaffold_465_18
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21394..22236
DNA (843bp) protein (281aa)
Putative phosphoprotein phosphatase n=1 Tax=Thauera phenylacetica B4P RepID=N6ZTV0_9RHOO
Putative phosphoprotein phosphatase {ECO:0000313|EMBL:ENO95569.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
Protein serine/threonine phosphatase
SCNpilot_expt_500_p_scaffold_465_19
Cupriavidus taiwanensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22355..22930
DNA (576bp) protein (192aa)
Replication/virulence associated protein putative exported protein n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=B3R2S0_CUPTR
sciN; replication/virulence associated protein; exported protein; K11906 type VI secretion system protein VasD
Replication/virulence associated protein putative exported protein {ECO:0000313|EMBL:CAQ68601.1}; TaxID=164546 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus taiwanensis (strain R1 / LMG 19424) (Ralstonia taiwanensis; (strain LMG 19424)).;"
SCNpilot_expt_500_p_scaffold_465_20
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22973..24307
DNA (1335bp) protein (445aa)
Type VI secretion protein, VC_A0114 family n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q330_ACIAP
type VI secretion protein; K11893 type VI secretion system protein ImpJ
Type VI secretion protein, VC_A0114 family {ECO:0000313|EMBL:ADX45432.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_expt_500_p_scaffold_465_21
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24550..25842
DNA (1293bp) protein (431aa)
Type IV / VI secretion system protein, DotU family n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q331_ACIAP rbh
DotU family type IV / VI secretion system protein; K11892 type VI secretion system protein ImpK rbh
Type IV / VI secretion system protein, DotU family {ECO:0000313|EMBL:ADX45433.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_expt_500_p_scaffold_465_22
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25842..29441
DNA (3600bp) protein (1200aa)
Uncharacterized protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9I7V0_BORPD
hypothetical protein; K11891 type VI secretion system protein ImpL
Uncharacterized protein {ECO:0000313|EMBL:CAP44450.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_expt_500_p_scaffold_465_23
Burkholderia ubonensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29441..30034
DNA (594bp) protein (198aa)
hypothetical protein n=1 Tax=Pseudomonas pyrrocinia RepID=UPI00036B4CEE
Uncharacterized protein {ECO:0000313|EMBL:AJX12271.1}; TaxID=1249668 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia ubonensis MSMB22.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_465_24
unknown

Not on your lists

comp(30539..31087)
DNA (549bp) protein (183aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_465_25
uncultured Thiohalocapsa sp. PB-PSB1, Thiohalocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31281..32378
DNA (1098bp) protein (366aa)
Uncharacterized protein n=1 Tax=uncultured Thiohalocapsa sp. PB-PSB1 RepID=V4J1L6_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:ESQ16147.1}; TaxID=1385625 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiohalocapsa; environmental samples.;" source="uncultured Thiohalocapsa sp. PB-PSB1.;"
nucleotidyltransferase
SCNpilot_expt_500_p_scaffold_465_26
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32375..33136
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Pseudomonas nitroreducens RepID=UPI0003178262
Nucleotidyltransferase {ECO:0000313|EMBL:EYR68881.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
hypothetical protein; K07074
SCNpilot_expt_500_p_scaffold_465_27
BJP_IG2103_Dechloromonas_60_92, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33198..33884)
DNA (687bp) protein (229aa)
RNA ligase domain, REL/Rln2 n=1 Tax=Nitrosomonas sp. AL212 RepID=F9ZHD9_9PROT
RNA ligase domain, REL/Rln2
Tax=BJP_IG2103_Dechloromonas_60_92
SCNpilot_expt_500_p_scaffold_465_28
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33874..34413)
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=Cupriavidus sp. WS RepID=UPI00035F7F73
Uncharacterized protein {ECO:0000313|EMBL:EXI90620.1}; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_465_29
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34410..35786)
DNA (1377bp) protein (459aa)
Uncharacterized protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BVJ5_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EXI90619.1}; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_465_30
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36035..36382)
DNA (348bp) protein (116aa)
cupin n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002F9322E
tetracenomycin polyketide synthesis protein
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
Displaying items 1-30 of 40 in total

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