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SCNpilot_expt_500_p_scaffold_3717

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_3717_1
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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3..941
DNA (939bp) protein (313aa)
Relaxase/mobilization nuclease domain protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W0M5_9FLAO
Relaxase/mobilization nuclease domain protein {ECO:0000313|EMBL:EFK34024.1}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
Relaxase/mobilization nuclease family protein
SCNpilot_expt_500_p_scaffold_3717_2
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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986..1444
DNA (459bp) protein (153aa)
Transcriptional regulator, ArsR family n=3 Tax=Bacteroidetes RepID=F0S633_PEDSD rbh
ArsR family transcriptional regulator rbh
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ADY52136.1}; Flags: Precursor;; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
SCNpilot_expt_500_p_scaffold_3717_3
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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1441..2040
DNA (600bp) protein (200aa)
Heavy metal transport/detoxification protein n=3 Tax=Bacteroidetes RepID=F0S634_PEDSD rbh
heavy metal transport/detoxification protein rbh
Heavy metal transporter {ECO:0000313|EMBL:KEQ31112.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
SCNpilot_expt_500_p_scaffold_3717_4
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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2042..2248
DNA (207bp) protein (69aa)
Uncharacterized protein n=2 Tax=Sphingobacteriaceae RepID=F0S635_PEDSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADY52138.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
SCNpilot_expt_500_p_scaffold_3717_5
Flavobacterium hibernum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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2446..4446
DNA (2001bp) protein (667aa)
TraG family protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W0M1_9FLAO
Strain DSM 12611 Contig03, whole genome shotgun sequence {ECO:0000313|EMBL:KIO54472.1}; TaxID=37752 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium hibernum.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_3717_6
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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4609..5148
DNA (540bp) protein (180aa)
Transcriptional regulator, AraC family n=2 Tax=Sphingobacterium spiritivorum RepID=D7VNR6_9SPHI rbh
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EFK57563.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
AraC family transcriptional regulator
SCNpilot_expt_500_p_scaffold_3717_7
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(5164..5580)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FXE5_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EEI92386.1}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
ferric uptake regulator family protein; K03711 Fur family transcriptional regulator, ferric uptake regulator
SCNpilot_expt_500_p_scaffold_3717_8
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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5616..7958
DNA (2343bp) protein (781aa)
TonB-dependent receptor n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FXE6_9SPHI rbh
TonB-dependent receptor {ECO:0000313|EMBL:EEI92387.1}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein rbh
SCNpilot_expt_500_p_scaffold_3717_9
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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7994..8557
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FXE7_9SPHI rbh
Uncharacterized protein {ECO:0000313|EMBL:EEI92388.1}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_3717_10
Chryseobacterium indologenes, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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8822..8929
DNA (108bp) protein (36aa)
copper-translocating P-type ATPase (EC:3.6.3.4); K01533 Cu2+-exporting ATPase [EC:3.6.3.4]
Copper-exporting ATPase n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W8X1_9FLAO
Copper-transporting ATPase CopA {ECO:0000313|EMBL:GAE64128.1}; TaxID=1218103 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium indologenes NBRC 14944.;"
Displaying 10 items

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