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SCNpilot_expt_500_p_scaffold_3

Search features with annotation key words

Displaying items 1-30 of 601 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_3_1
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(98..982)
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TGA0_NIAKG rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEW02739.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_500_p_scaffold_3_2
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1189..1797
DNA (609bp) protein (203aa)
Sua5/YciO/YrdC/YwlC family protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TGA1_NIAKG
Translation factor Sua5 {ECO:0000313|EMBL:KIC91141.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
Sua5/YciO/YrdC/YwlC family protein; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein
SCNpilot_expt_500_p_scaffold_3_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(1931..2227)
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MIC6_9BACT id=5223716 bin=16ft_combo_ws3_JS1 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
SCNpilot_expt_500_p_scaffold_3_4
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(2604..3227)
DNA (624bp) protein (208aa)
ribonuclease H; K03470 ribonuclease HII [EC:3.1.26.4]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037A233F
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_500_p_scaffold_3_5
Fibrella aestuarina, Fibrella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

3308..4222
DNA (915bp) protein (305aa)
hypothetical protein n=1 Tax=Rudanella lutea RepID=UPI000365FFA3
ctaA; Heme A synthase HAS
Heme A synthase HAS {ECO:0000313|EMBL:CCG99086.1}; TaxID=1166018 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrella.;" source="Fibrella aestuarina BUZ 2.;"
SCNpilot_expt_500_p_scaffold_3_6
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4252..6483
DNA (2232bp) protein (744aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TGB3_NIAKG rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEW02752.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_500_p_scaffold_3_7
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6630..7535)
DNA (906bp) protein (302aa)
diacylglycerol kinase n=1 Tax=Niabella aurantiaca RepID=UPI00037C3650 rbh
Diacylglycerol kinase {ECO:0000313|EMBL:AHF15936.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein; K07029 rbh
SCNpilot_expt_500_p_scaffold_3_8
unknown

Not on your lists

comp(7539..8015)
DNA (477bp) protein (159aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_3_9
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8052..9101)
DNA (1050bp) protein (350aa)
3-oxoacyl-[acyl-carrier-protein] synthase 3 {ECO:0000256|HAMAP-Rule:MF_01815}; EC=2.3.1.180 {ECO:0000256|HAMAP-Rule:MF_01815, ECO:0000256|SAAS:SAAS00048658};; 3-oxoacyl-[acyl-carrier-protein] synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; Beta-ketoacyl-ACP synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
3-oxoacyl-ACP synthase (EC:2.3.1.41); K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] rbh
3-oxoacyl-[acyl-carrier-protein] synthase 3 n=1 Tax=Niabella soli DSM 19437 RepID=H1NQT3_9SPHI rbh
SCNpilot_expt_500_p_scaffold_3_10
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9319..14436
DNA (5118bp) protein (1706aa)
Uncharacterized protein n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4L105_HALH1 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEE51592.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
SCNpilot_expt_500_p_scaffold_3_11
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

14433..16739
DNA (2307bp) protein (769aa)
Surface antigen (D15) n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TNY7_NIAKG rbh
surface antigen (D15) rbh
Surface antigen (D15) {ECO:0000313|EMBL:AEW02072.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_500_p_scaffold_3_12
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16838..17548)
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THG2_NIAKG rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO42836.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_3_13
unknown

Not on your lists

comp(17704..18900)
DNA (1197bp) protein (399aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_3_14
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

19119..20201
DNA (1083bp) protein (361aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003661784
group 1 glycosyl transferase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_500_p_scaffold_3_15
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

20235..20582
DNA (348bp) protein (116aa)
Protein involved in gliding motility GldC n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THG3_NIAKG
Gliding motility protein GldC {ECO:0000313|EMBL:KIC92132.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
gliding motility protein GldC
SCNpilot_expt_500_p_scaffold_3_16
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

20614..21069
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THG4_NIAKG
hypothetical protein; K09117 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW02810.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_500_p_scaffold_3_17
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

21086..21604
DNA (519bp) protein (173aa)
Colicin V production protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NQU2_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF17760.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
colicin V production protein; K03558 membrane protein required for colicin V production
SCNpilot_expt_500_p_scaffold_3_18
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

21763..23040
DNA (1278bp) protein (426aa)
sterol desaturase n=1 Tax=Spirosoma panaciterrae RepID=UPI00035C4213 rbh
fatty acid hydroxylase rbh
Fatty acid hydroxylase {ECO:0000313|EMBL:AEI51682.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
SCNpilot_expt_500_p_scaffold_3_19
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23189..23968
DNA (780bp) protein (260aa)
Alpha/beta hydrolase fold protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THG6_NIAKG rbh
Putative hydrolase {ECO:0000313|EMBL:GAO42841.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
alpha/beta hydrolase fold protein rbh
SCNpilot_expt_500_p_scaffold_3_20
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

24004..24666
DNA (663bp) protein (221aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000380AD7E
Uncharacterized protein {ECO:0000313|EMBL:AHF17759.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_3_21
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

24763..26223
DNA (1461bp) protein (487aa)
Surface antigen variable number repeat-containing protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NQT9_9SPHI rbh
Uncharacterized protein {ECO:0000313|EMBL:AHF17758.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
surface antigen variable number repeat-containing protein rbh
SCNpilot_expt_500_p_scaffold_3_22
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

26231..27109
DNA (879bp) protein (293aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
inorganic polyphosphate/ATP-NAD kinase; K00858 NAD+ kinase [EC:2.7.1.23] rbh
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Niabella soli DSM 19437 RepID=H1NQT8_9SPHI rbh
SCNpilot_expt_500_p_scaffold_3_23
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

27177..28040
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THH0_NIAKG rbh
Uncharacterized protein {ECO:0000313|EMBL:KIC94780.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_3_24
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

28114..28860
DNA (747bp) protein (249aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
undecaprenyl pyrophosphate synthase; K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31] rbh
UDP pyrophosphate synthase n=1 Tax=Niabella aurantiaca RepID=UPI0003791EAC rbh
SCNpilot_expt_500_p_scaffold_3_25
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

29071..31800
DNA (2730bp) protein (910aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036B77D6 rbh
Uncharacterized protein {ECO:0000313|EMBL:KIC94778.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
surface antigen (D15); K07277 outer membrane protein rbh
SCNpilot_expt_500_p_scaffold_3_26
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

31815..32354
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000377E83E
Uncharacterized protein {ECO:0000313|EMBL:GAO42848.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
outer membrane chaperone Skp; K06142 outer membrane protein
SCNpilot_expt_500_p_scaffold_3_27
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

32464..33048
DNA (585bp) protein (195aa)
Outer membrane chaperone Skp (OmpH) n=1 Tax=Niabella soli DSM 19437 RepID=H1NRG5_9SPHI
Molecular chaperone Skp {ECO:0000313|EMBL:AHF16562.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
outer membrane chaperone Skp; K06142 outer membrane protein
SCNpilot_expt_500_p_scaffold_3_28
Brachyspira murdochii, Brachyspira, Brachyspirales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

33170..34987
DNA (1818bp) protein (606aa)
hypothetical protein n=1 Tax=Brachyspira innocens RepID=UPI0003695525
hypothetical protein
TPR repeat-containing protein {ECO:0000313|EMBL:ADG71690.1}; TaxID=526224 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira.;" source="Brachyspira murdochii (strain ATCC 51284 / DSM 12563 / 56-150); (Serpulina murdochii).;"
SCNpilot_expt_500_p_scaffold_3_29
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

35015..35833
DNA (819bp) protein (273aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
glutamate racemase; K01776 glutamate racemase [EC:5.1.1.3] rbh
Glutamate racemase n=1 Tax=Niabella soli DSM 19437 RepID=H1NQA1_9SPHI rbh
SCNpilot_expt_500_p_scaffold_3_30
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


36101..36256
DNA (156bp) protein (52aa)
50S ribosomal protein L34 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THH6_NIAKG
50S ribosomal protein L34P; K02914 large subunit ribosomal protein L34
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|SAAS:SAAS00020245}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Displaying items 1-30 of 601 in total

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