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SCNpilot_expt_500_p_scaffold_121

Search features with annotation key words

Displaying items 1-30 of 100 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_121_1
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(233..661)
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00035C456A
Uncharacterized protein {ECO:0000313|EMBL:AHF17686.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_500_p_scaffold_121_2
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(667..1383)
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMT0_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KIC94557.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
SCNpilot_expt_500_p_scaffold_121_3
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1421..1975)
DNA (555bp) protein (185aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMT1_NIAKG rbh
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily rbh
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEW03102.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_500_p_scaffold_121_4
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2215..3174)
DNA (960bp) protein (320aa)
1-deoxy-D-xylulose-5-phosphate synthase; K00615 transketolase [EC:2.2.1.1] rbh
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Niabella soli DSM 19437 RepID=H1NUF4_9SPHI rbh
Transketolase {ECO:0000313|EMBL:AHF15718.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_500_p_scaffold_121_5
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3224..4279)
DNA (1056bp) protein (352aa)
UDP-galactose 4-epimerase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] rbh
UDP-galactose 4-epimerase {ECO:0000313|EMBL:AEW03106.1}; EC=5.1.3.2 {ECO:0000313|EMBL:AEW03106.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
UDP-galactose 4-epimerase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMT5_NIAKG rbh
SCNpilot_expt_500_p_scaffold_121_6
GWF2_Bacteroidetes_38_335_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4343..5539)
DNA (1197bp) protein (399aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003696F1A rbh
phosphate transporter; K03306 inorganic phosphate transporter, PiT family
Tax=GWF2_Bacteroidetes_38_335_curated
SCNpilot_expt_500_p_scaffold_121_7
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5588..6235)
DNA (648bp) protein (216aa)
Putative phosphate transport regulator n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMT8_NIAKG rbh
Phosphate transport regulator {ECO:0000313|EMBL:KIC92392.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
putative phosphate transport regulator; K07220 hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_121_8
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

6527..9280
DNA (2754bp) protein (918aa)
TonB-dependent receptor n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S751_PEDSD rbh
Uncharacterized protein {ECO:0000313|EMBL:KIC94552.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
TonB-dependent receptor rbh
SCNpilot_expt_500_p_scaffold_121_9
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9330..10697
DNA (1368bp) protein (456aa)
Uncharacterized protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S752_PEDSD rbh
Uncharacterized protein {ECO:0000313|EMBL:KIC94667.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_121_10
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10781..11968)
DNA (1188bp) protein (396aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMU4_NIAKG rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEW03115.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_500_p_scaffold_121_11
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12293..13294)
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NSM8_9SPHI rbh
Glycosyl transferase {ECO:0000313|EMBL:AHF16077.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_121_12
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13556..14407)
DNA (852bp) protein (284aa)
phosphoesterase n=1 Tax=Niabella aurantiaca RepID=UPI0003736137 rbh
Phosphoesterase {ECO:0000313|EMBL:AHF16078.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
metallophosphoesterase rbh
SCNpilot_expt_500_p_scaffold_121_13
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

14562..15641
DNA (1080bp) protein (360aa)
Arylsulfatase A family protein n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KPW9_SOLCM
Uncharacterized protein {ECO:0000313|EMBL:ETZ20980.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
arylsulfatase A family protein
SCNpilot_expt_500_p_scaffold_121_14
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15784..16833)
DNA (1050bp) protein (350aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
integral membrane sensor signal transduction histidine kinase; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] rbh
histidine kinase n=1 Tax=Niabella aurantiaca RepID=UPI0003648DDA rbh
SCNpilot_expt_500_p_scaffold_121_15
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(16865..17542)
DNA (678bp) protein (226aa)
PhoP family transcriptional regulator n=1 Tax=Niabella aurantiaca RepID=UPI000379DF0D rbh
two component transcriptional regulator, winged helix family; K07658 two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP rbh
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_500_p_scaffold_121_16
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17793..19997
DNA (2205bp) protein (735aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037B7797 rbh
Uncharacterized protein {ECO:0000313|EMBL:AHF15967.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_121_17
candidate division TM7 genomosp. GTL1, Candidatus Saccharibacteria, Bacteria

Not on your lists

20185..21972
DNA (1788bp) protein (596aa)
ABC transporter-related protein n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KT80_9BACT rbh
ABC transporter-related protein {ECO:0000313|EMBL:EDK72344.1}; TaxID=443342 species="Bacteria; Candidatus Saccharibacteria.;" source="candidate division TM7 genomosp. GTL1.;"
xenobiotic-transporting ATPase; K06147 ATP-binding cassette, subfamily B, bacterial rbh
SCNpilot_expt_500_p_scaffold_121_18
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

22089..23177
DNA (1089bp) protein (363aa)
ATP synthase F0 subcomplex subunit A; K02108 F-type H+-transporting ATPase subunit a [EC:3.6.3.14] rbh
ATP synthase F0 subunit A n=1 Tax=Niabella aurantiaca RepID=UPI00036D197D rbh
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:MF_01393}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_500_p_scaffold_121_19
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

23216..23464
DNA (249bp) protein (83aa)
ATP synthase subunit c; K02110 F-type H+-transporting ATPase subunit c [EC:3.6.3.14]
ATP synthase subunit c n=1 Tax=Niabella soli DSM 19437 RepID=H1NR99_9SPHI
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_500_p_scaffold_121_20
candidate division TM7 genomosp. GTL1, Candidatus Saccharibacteria, Bacteria

Not on your lists

23554..24048
DNA (495bp) protein (165aa)
ATP synthase F0 subcomplex subunit B; K02109 F-type H+-transporting ATPase subunit b [EC:3.6.3.14]
F0F1 ATP synthase subunit B n=1 Tax=Niabella aurantiaca RepID=UPI00036E9265
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=443342 species="Bacteria; Candidatus Saccharibacteria.;" source="candidate division TM7 genomosp. GTL1.;"
SCNpilot_expt_500_p_scaffold_121_21
candidate division TM7 genomosp. GTL1, Candidatus Saccharibacteria, Bacteria

Not on your lists

24124..24687
DNA (564bp) protein (188aa)
ATP synthase F1 subcomplex subunit delta; K02113 F-type H+-transporting ATPase subunit delta [EC:3.6.3.14]
ATP synthase subunit delta n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KT84_9BACT
ATP synthase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; ATP synthase F(1) sector subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; F-type ATPase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; TaxID=443342 species="Bacteria; Candidatus Saccharibacteria.;" source="candidate division TM7 genomosp. GTL1.;"
SCNpilot_expt_500_p_scaffold_121_22
Saprospira grandis, Saprospira, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

24758..27844
DNA (3087bp) protein (1029aa)
hypothetical protein n=1 Tax=Lewinella cohaerens RepID=UPI0003795481 rbh
Calx-beta domain-containing protein {ECO:0000313|EMBL:EJF52271.1}; Flags: Precursor;; TaxID=694433 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Saprospira.;" source="Saprospira grandis DSM 2844.;"
metalloprotease Fpp2 rbh
SCNpilot_expt_500_p_scaffold_121_23
candidate division TM7 genomosp. GTL1, Candidatus Saccharibacteria, Bacteria

Not on your lists

27989..29566
DNA (1578bp) protein (526aa)
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; TaxID=443342 species="Bacteria; Candidatus Saccharibacteria.;" source="candidate division TM7 genomosp. GTL1.;"
ATP synthase F1 subcomplex subunit alpha; K02111 F-type H+-transporting ATPase subunit alpha [EC:3.6.3.14] rbh
ATP synthase subunit alpha n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KT85_9BACT rbh
SCNpilot_expt_500_p_scaffold_121_24
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

29794..30504
DNA (711bp) protein (237aa)
Two component transcriptional regulator, LytTR family n=1 Tax=Niabella soli DSM 19437 RepID=H1NV03_9SPHI
Transcriptional regulator {ECO:0000313|EMBL:AHF16289.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
LytTR family two component transcriptional regulator
SCNpilot_expt_500_p_scaffold_121_25
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

30513..32681
DNA (2169bp) protein (723aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00035DA3E6 rbh
Chemotaxis protein CheY {ECO:0000313|EMBL:AHF16003.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
histidine kinase
SCNpilot_expt_500_p_scaffold_121_26
unknown

Not on your lists

32684..33097
DNA (414bp) protein (138aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_121_27
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

33152..34054
DNA (903bp) protein (301aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003756158
Uncharacterized protein {ECO:0000313|EMBL:AHF17787.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_121_28
unknown

Not on your lists

34445..35248
DNA (804bp) protein (268aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_121_29
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

35539..37788
DNA (2250bp) protein (750aa)
TonB-dependent receptor plug n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TP13_NIAKG rbh
TonB-dependent receptor plug rbh
TonB-dependent receptor plug {ECO:0000313|EMBL:AEW03131.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_500_p_scaffold_121_30
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

37808..38449
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TP15_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW03133.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Displaying items 1-30 of 100 in total

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