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SCNpilot_expt_500_p_scaffold_139

Search features with annotation key words

Displaying items 1-30 of 115 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_139_1
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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1..1698
DNA (1698bp) protein (566aa)
PKD domain containing protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PAH2_CHIPD rbh
PKD domain-containing protein rbh
PKD domain containing protein {ECO:0000313|EMBL:ACU61176.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_p_scaffold_139_2
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2164..3093)
DNA (930bp) protein (310aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
phosphoribosylaminoimidazolesuccinocarboxamide synthase; K01923 phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] rbh
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T6R3_NIAKG rbh
SCNpilot_expt_500_p_scaffold_139_3
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3199..6189
DNA (2991bp) protein (997aa)
TonB-dependent receptor n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T6R4_NIAKG rbh
TonB-dependent receptor rbh
TonB-dependent receptor {ECO:0000313|EMBL:AEV97917.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_500_p_scaffold_139_4
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6292..7182)
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TE88_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV97279.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_500_p_scaffold_139_5
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7300..8283)
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003748F39 rbh
Uncharacterized protein {ECO:0000313|EMBL:AHF17399.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_139_6
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8504..9502
DNA (999bp) protein (333aa)
DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta [EC:2.7.7.7] rbh
DNA polymerase III, delta subunit {ECO:0000313|EMBL:AEV97281.1}; EC=2.7.7.7 {ECO:0000313|EMBL:AEV97281.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
DNA polymerase III, delta subunit n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TE90_NIAKG rbh
SCNpilot_expt_500_p_scaffold_139_7
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9589..10356
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TIQ4_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC92206.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_139_8
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10508..11443)
DNA (936bp) protein (312aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
riboflavin biosynthesis protein RibF; K11753 riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] rbh
Riboflavin biosynthesis protein RibF n=1 Tax=Niabella soli DSM 19437 RepID=H1NMH9_9SPHI rbh
SCNpilot_expt_500_p_scaffold_139_9
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11533..12711
DNA (1179bp) protein (393aa)
Phosphoribosylformylglycinamidine cyclo-ligase; K01933 phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] rbh
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Niabella soli DSM 19437 RepID=H1NMH8_9SPHI rbh
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000313|EMBL:AHF14696.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_500_p_scaffold_139_10
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12766..13020)
DNA (255bp) protein (85aa)
Acyl-coA-binding protein ACBP n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THR9_NIAKG
Acyl-CoA-binding protein {ECO:0000313|EMBL:KIC93863.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
acyl-coA-binding protein ACBP
SCNpilot_expt_500_p_scaffold_139_11
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13079..14716)
DNA (1638bp) protein (546aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037AC6DC rbh
type I phosphodiesterase/nucleotide pyrophosphatase rbh
Type I phosphodiesterase/nucleotide pyrophosphatase {ECO:0000313|EMBL:ACU03383.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
SCNpilot_expt_500_p_scaffold_139_12
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14788..15990)
DNA (1203bp) protein (401aa)
Major facilitator superfamily MFS_1 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TH07_NIAKG rbh
MFS transporter {ECO:0000313|EMBL:KIC91584.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
major facilitator superfamily protein rbh
SCNpilot_expt_500_p_scaffold_139_13
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16007..17026)
DNA (1020bp) protein (340aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000367E3B9 rbh
Ferredoxin {ECO:0000313|EMBL:KIC94958.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
oxidoreductase FAD-binding domain-containing protein; K02613 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE
SCNpilot_expt_500_p_scaffold_139_14
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17189..18316
DNA (1128bp) protein (376aa)
Putative alpha-dextrin endo-1, 6-alpha-glucosidase n=1 Tax=Flavobacteriaceae bacterium (strain 3519-10) RepID=C6X182_FLAB3 rbh
Uncharacterized protein {ECO:0000313|EMBL:KIC93007.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
alpha-dextran endo-1,6-alpha-glucosidase rbh
SCNpilot_expt_500_p_scaffold_139_15
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18429..19337)
DNA (909bp) protein (303aa)
Ribonuclease Z {ECO:0000256|HAMAP-Rule:MF_01818}; Short=RNase Z {ECO:0000256|HAMAP-Rule:MF_01818};; EC=3.1.26.11 {ECO:0000256|HAMAP-Rule:MF_01818};; tRNA 3 endonuclease {ECO:0000256|HAMAP-Rule:MF_01818}; tRNase Z {ECO:0000256|HAMAP-Rule:MF_01818}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Ribonuclease Z; K00784 ribonuclease Z [EC:3.1.26.11] rbh
Ribonuclease Z n=1 Tax=Niabella soli DSM 19437 RepID=H1NRY9_9SPHI rbh
SCNpilot_expt_500_p_scaffold_139_16
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19421..19798)
DNA (378bp) protein (126aa)
Sulfate transporter/antisigma-factor antagonist STAS n=1 Tax=Niabella soli DSM 19437 RepID=H1NRZ0_9SPHI
Anti-sigma-factor antagonist {ECO:0000313|EMBL:KIC93005.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
sulfate transporter/antisigma-factor antagonist STAS
SCNpilot_expt_500_p_scaffold_139_17
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

19894..22443
DNA (2550bp) protein (850aa)
ATP-dependent Clp protease ClpC n=1 Tax=Niabella aurantiaca RepID=UPI00035D35C8 rbh
ATPase AAA-2 domain protein {ECO:0000313|EMBL:AEW00981.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
ATPase AAA-2 domain-containing protein; K03696 ATP-dependent Clp protease ATP-binding subunit ClpC rbh
SCNpilot_expt_500_p_scaffold_139_18
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22675..23343)
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034BDBAF
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
SCNpilot_expt_500_p_scaffold_139_19
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23576..26440
DNA (2865bp) protein (955aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000381B7CB rbh
SNF2-related protein {ECO:0000313|EMBL:AEV99852.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SNF2-related protein rbh
SCNpilot_expt_500_p_scaffold_139_20
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

26813..28957
DNA (2145bp) protein (715aa)
Elongation factor G n=1 Tax=Niabella soli DSM 19437 RepID=H1NJL0_9SPHI rbh
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
translation elongation factor 2 (EF-2/EF-G); K02355 elongation factor G rbh
SCNpilot_expt_500_p_scaffold_139_21
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

29388..30014
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJ08_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV97525.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_500_p_scaffold_139_22
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


30204..30509
DNA (306bp) protein (102aa)
30S ribosomal protein S10 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TNL4_NIAKG
30S ribosomal protein S10; K02946 small subunit ribosomal protein S10
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_500_p_scaffold_139_23
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


30787..31404
DNA (618bp) protein (206aa)
50S ribosomal protein L3 n=1 Tax=Niabella soli DSM 19437 RepID=H1NNT2_9SPHI rbh
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
50S ribosomal protein L3; K02906 large subunit ribosomal protein L3 rbh
SCNpilot_expt_500_p_scaffold_139_24
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists


31437..32069
DNA (633bp) protein (211aa)
50S ribosomal protein L4 n=1 Tax=Niabella soli DSM 19437 RepID=H1NNT3_9SPHI rbh
50S ribosomal protein L4; K02926 large subunit ribosomal protein L4 rbh
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_500_p_scaffold_139_25
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


32137..32436
DNA (300bp) protein (100aa)
50S ribosomal protein L23 n=1 Tax=Niabella aurantiaca RepID=UPI0003796E17
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
50S ribosomal protein L23; K02892 large subunit ribosomal protein L23
SCNpilot_expt_500_p_scaffold_139_26
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


32533..33372
DNA (840bp) protein (280aa)
50S ribosomal protein L2 n=1 Tax=Niabella soli DSM 19437 RepID=H1NNT5_9SPHI rbh
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
50S ribosomal protein L2; K02886 large subunit ribosomal protein L2 rbh
SCNpilot_expt_500_p_scaffold_139_27
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


33440..33706
DNA (267bp) protein (89aa)
30S ribosomal protein S19 n=1 Tax=Niabella aurantiaca RepID=UPI00036C3C51
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
30S ribosomal protein S19; K02965 small subunit ribosomal protein S19
SCNpilot_expt_500_p_scaffold_139_28
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


33755..34195
DNA (441bp) protein (147aa)
50S ribosomal protein L22 n=1 Tax=Niabella aurantiaca RepID=UPI00036B64BA
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
50S ribosomal protein L22; K02890 large subunit ribosomal protein L22
SCNpilot_expt_500_p_scaffold_139_29
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


34198..34983
DNA (786bp) protein (262aa)
30S ribosomal protein S3 n=1 Tax=Niabella soli DSM 19437 RepID=H1NNT8_9SPHI rbh
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 rbh
SCNpilot_expt_500_p_scaffold_139_30
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


35026..35448
DNA (423bp) protein (141aa)
50S ribosomal protein L16 n=1 Tax=Niabella aurantiaca RepID=UPI00035CC9C5
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
50S ribosomal protein L16; K02878 large subunit ribosomal protein L16
Displaying items 1-30 of 115 in total

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