ggKbase home page

SCNpilot_expt_500_p_scaffold_308

Search features with annotation key words

Displaying items 1-30 of 49 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_308_1
unknown

Not on your lists

2..406
DNA (405bp) protein (135aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_308_2
unknown

Not on your lists

comp(809..1339)
DNA (531bp) protein (177aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_308_3
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1752..2165)
DNA (414bp) protein (138aa)
RHS repeat-associated core domain protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDE8_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC91307.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
RHS repeat-associated core domain-containing protein
SCNpilot_expt_500_p_scaffold_308_4
Sphingobacterium paucimobilis, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2416..4440)
DNA (2025bp) protein (675aa)
Uncharacterized protein n=1 Tax=Sphingobacterium paucimobilis HER1398 RepID=U2HFT2_9SPHI rbh
Uncharacterized protein {ECO:0000313|EMBL:ERJ60606.1}; TaxID=1346330 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium paucimobilis HER1398.;"
PKD domain-containing protein
SCNpilot_expt_500_p_scaffold_308_5
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4693..5250
DNA (558bp) protein (186aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJU8_NIAKG
sigma-70 family RNA polymerase sigma factor
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AEW01846.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_500_p_scaffold_308_6
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5260..5973
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJU7_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW01845.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_500_p_scaffold_308_7
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5956..6564)
DNA (609bp) protein (203aa)
cAMP-binding protein n=1 Tax=Imtechella halotolerans K1 RepID=I0WE87_9FLAO
Anaerobic regulatory protein {ECO:0000313|EMBL:KHJ37484.1}; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter glucosidilyticus.;"
cAMP-binding protein
SCNpilot_expt_500_p_scaffold_308_8
Mariniradius saccharolyticus, Mariniradius, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(6695..7066)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Mariniradius saccharolyticus AK6 RepID=M7Y3X8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EMS35427.1}; TaxID=1239962 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Mariniradius.;" source="Mariniradius saccharolyticus AK6.;"
hypothetical protein; K09922 hypothetical protein
SCNpilot_expt_500_p_scaffold_308_9
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(7083..8102)
DNA (1020bp) protein (340aa)
Fumarylacetoacetate (FAA) hydrolase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THD9_NIAKG rbh
fumarylacetoacetate (FAA) hydrolase rbh
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_500_p_scaffold_308_10
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8191..9438
DNA (1248bp) protein (416aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036AB2B3 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEW02786.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_500_p_scaffold_308_11
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9455..11980
DNA (2526bp) protein (842aa)
glycoside hydrolase n=1 Tax=Pedobacter agri RepID=UPI000299E053 rbh
Cellulase {ECO:0000313|EMBL:KIA91832.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
glycoside hydrolase family protein rbh
SCNpilot_expt_500_p_scaffold_308_12
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11977..12735
DNA (759bp) protein (253aa)
fatty acid hydroxylase n=1 Tax=Niabella aurantiaca RepID=UPI00036945BB rbh
Fatty acid hydroxylase {ECO:0000313|EMBL:AHF16121.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
fatty acid hydroxylase rbh
SCNpilot_expt_500_p_scaffold_308_13
unknown

Not on your lists

comp(12738..13046)
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000372B52A
SCNpilot_expt_500_p_scaffold_308_14
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

13153..15960
DNA (2808bp) protein (936aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NSM7_9SPHI rbh
Uncharacterized protein {ECO:0000313|EMBL:AHF16076.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_308_15
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(15957..16751)
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THE7_NIAKG rbh
hypothetical protein rbh
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_500_p_scaffold_308_16
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16805..16951)
DNA (147bp) protein (49aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PB56_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU59428.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_p_scaffold_308_17
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17022..18164)
DNA (1143bp) protein (381aa)
cystathionine gamma-lyase; K01760 cystathionine beta-lyase [EC:4.4.1.8] rbh
Cystathionine gamma-lyase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THE8_NIAKG rbh
Cystathionine gamma-synthase {ECO:0000313|EMBL:KIC96339.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
SCNpilot_expt_500_p_scaffold_308_18
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18502..18960
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THE9_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW02795.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_500_p_scaffold_308_19
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19042..20898)
DNA (1857bp) protein (619aa)
asparagine synthase; K01953 asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] rbh
Asparagine synthase (Glutamine-hydrolyzing) {ECO:0000313|EMBL:AEW02796.1}; EC=6.3.5.4 {ECO:0000313|EMBL:AEW02796.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Asparagine synthetase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THF0_NIAKG rbh
SCNpilot_expt_500_p_scaffold_308_20
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21074..22885)
DNA (1812bp) protein (604aa)
GTP-binding protein TypA n=1 Tax=Niabella soli DSM 19437 RepID=H1NQT1_9SPHI rbh
GTP-binding protein TypA {ECO:0000313|EMBL:AHF15934.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
GTP-binding protein TypA; K06207 GTP-binding protein rbh
SCNpilot_expt_500_p_scaffold_308_21
GWF2_Bacteroidetes_43_11_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23294..24694
DNA (1401bp) protein (467aa)
oxidoreductase domain-containing protein id=2172245 bin=GWE2_Bacteroidetes_42_24 species=Pedobacter agri genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_24 organism_group=Bacteroidetes rbh
oxidoreductase domain-containing protein rbh
Tax=GWF2_Bacteroidetes_43_11_curated
SCNpilot_expt_500_p_scaffold_308_22
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(24703..26622)
DNA (1920bp) protein (640aa)
TonB-dependent receptor plug n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VS05_DYAFD rbh
TonB-dependent receptor plug; K02014 iron complex outermembrane recepter protein rbh
TonB-dependent receptor plug {ECO:0000313|EMBL:ACT94526.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_expt_500_p_scaffold_308_23
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26941..27327)
DNA (387bp) protein (129aa)
methylated-DNA--protein-cysteine methyltransferase n=1 Tax=Niabella aurantiaca RepID=UPI00035E93D5
methylated-DNA-(protein)-cysteine S-methyltransferase DNA binding protein; K07443 methylated-DNA-protein-cysteine methyltransferase related protein
Methylated-DNA-(Protein)-cysteine S-methyltransferase DNA binding protein {ECO:0000313|EMBL:AEW02708.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_500_p_scaffold_308_24
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(27340..27549)
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NT24_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF17839.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_308_25
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(27536..28243)
DNA (708bp) protein (236aa)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
tRNA (guanine-N(7)-)-methyltransferase; K03439 tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Niabella aurantiaca RepID=UPI0003631850 rbh
SCNpilot_expt_500_p_scaffold_308_26
BJP_08E140C01_Bacteriodales_41_10, Bacteriodales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

28339..28941
DNA (603bp) protein (201aa)
Outer membrane transport energization protein TonB n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RVW5_LEAB4
outer membrane transport energization protein tonb; K03832 periplasmic protein TonB
Tax=BJP_08E140C01_Bacteriodales_41_10
SCNpilot_expt_500_p_scaffold_308_27
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29137..30066)
DNA (930bp) protein (310aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036C4FA6 rbh
Uncharacterized protein {ECO:0000313|EMBL:AHF16106.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_308_28
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

30564..31031
DNA (468bp) protein (156aa)
Transcriptional regulator, AsnC family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TG74_NIAKG
transcriptional regulator, AsnC family; K03718 Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:AEW02713.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_500_p_scaffold_308_29
Leeuwenhoekiella blandensis, Leeuwenhoekiella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(31121..35422)
DNA (4302bp) protein (1434aa)
Uncharacterized protein n=1 Tax=Leeuwenhoekiella blandensis (strain CECT 7118 / CCUG 51940 / MED217) RepID=A3XPS4_LEEBM
Uncharacterized protein {ECO:0000313|EMBL:EAQ48447.1}; TaxID=398720 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Leeuwenhoekiella.;" source="Leeuwenhoekiella blandensis (strain CECT 7118 / CCUG 51940 / MED217); (Flavobacterium sp. (strain MED217)).;"
caspase family domain containing protein
SCNpilot_expt_500_p_scaffold_308_30
Hassallia byssoidea, Hassallia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

35719..36888
DNA (1170bp) protein (390aa)
Thiol:disulfide interchange protein n=1 Tax=Saprospira grandis DSM 2844 RepID=J0P696_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:KIF33756.1}; TaxID=1304833 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Hassallia.;" source="Hassallia byssoidea VB512170.;"
putative disulfide-isomerase
Displaying items 1-30 of 49 in total

View Taxonomy