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SCNpilot_expt_500_p_scaffold_488

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Displaying items 1-30 of 40 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_488_1
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..462
DNA (462bp) protein (154aa)
Electron transfer flavoprotein subunit beta n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0IFL1_9SPHN
Electron transfer flavoprotein subunit beta {ECO:0000313|EMBL:EQB10485.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
electron transfer flavoprotein subunit alpha; K03522 electron transfer flavoprotein alpha subunit
SCNpilot_expt_500_p_scaffold_488_2
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

475..1344
DNA (870bp) protein (290aa)
3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.157); K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] rbh
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Novosphingobium sp. AP12 RepID=J2ZNU2_9SPHN rbh
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:EJL21001.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
SCNpilot_expt_500_p_scaffold_488_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1566..2261)
DNA (696bp) protein (232aa)
Putative transposase n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4YY48_SPHJU
Mobile element protein {ECO:0000313|EMBL:GAO52989.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
transposase
SCNpilot_expt_500_p_scaffold_488_4
unknown

Not on your lists

comp(2620..2805)
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_488_5
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2802..3581)
DNA (780bp) protein (260aa)
Beta-lactamase-like protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EJ03_9SPHN rbh
Beta-lactamase-like protein {ECO:0000313|EMBL:EHJ58762.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
beta-lactamase-like protein; K06167 PhnP protein rbh
SCNpilot_expt_500_p_scaffold_488_6
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3578..4351)
DNA (774bp) protein (258aa)
TatD-related deoxyribonuclease; K03424 TatD DNase family protein [EC:3.1.21.-] rbh
LuxR family transcriptional regulator n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HRG8_9SPHN rbh
TatD-related deoxyribonuclease {ECO:0000313|EMBL:KHS48535.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
SCNpilot_expt_500_p_scaffold_488_7
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(4351..5895)
DNA (1545bp) protein (515aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00012840}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00012840};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
methionyl-tRNA synthetase (EC:6.1.1.10); K01874 methionyl-tRNA synthetase [EC:6.1.1.10] rbh
Methionine--tRNA ligase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VTP3_9SPHN rbh
SCNpilot_expt_500_p_scaffold_488_8
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5997..6947)
DNA (951bp) protein (317aa)
DNA polymerase III subunit delta {ECO:0000313|EMBL:KHS48533.1}; EC=2.7.7.7 {ECO:0000313|EMBL:KHS48533.1};; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
DNA polymerase III subunit delta' (EC:2.7.7.7); K02341 DNA polymerase III subunit delta' [EC:2.7.7.7] rbh
DNA polymerase III subunit delta n=1 Tax=Sphingomonas sp. LH128 RepID=J8SMH6_9SPHN rbh
SCNpilot_expt_500_p_scaffold_488_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6944..7585)
DNA (642bp) protein (214aa)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
thymidylate kinase (EC:2.7.4.9); K00943 dTMP kinase [EC:2.7.4.9]
Thymidylate kinase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6Z2_NOVAD
SCNpilot_expt_500_p_scaffold_488_10
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7585..8835)
DNA (1251bp) protein (417aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4); K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] rbh
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VMN6_9SPHN rbh
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:EZP83482.1}; Flags: Precursor;; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
SCNpilot_expt_500_p_scaffold_488_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8920..10176)
DNA (1257bp) protein (419aa)
Putative rare lipoprotein A n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2NAF8_ERYLH
Rare lipoprotein A {ECO:0000313|EMBL:GAO56102.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
rare lipoprotein A; K03642 rare lipoprotein A
SCNpilot_expt_500_p_scaffold_488_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10160..11218)
DNA (1059bp) protein (353aa)
Lytic murein transglycosylase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6Y9_NOVAD rbh
Membrane-bound lytic murein transglycosylase B {ECO:0000313|EMBL:GAO56103.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
lytic murein transglycosylase rbh
SCNpilot_expt_500_p_scaffold_488_13
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12064..13077
DNA (1014bp) protein (338aa)
D-threo-aldose 1-dehydrogenase; K00064 D-threo-aldose 1-dehydrogenase [EC:1.1.1.122] rbh
Putative oxidoreductase, aryl-alcohol dehydrogenase like protein n=1 Tax=Sphingobium sp. AP49 RepID=J2WHE6_9SPHN rbh
Putative oxidoreductase, aryl-alcohol dehydrogenase like protein {ECO:0000313|EMBL:EJK82298.1}; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
SCNpilot_expt_500_p_scaffold_488_14
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13204..14049
DNA (846bp) protein (282aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VK35_CAUST rbh
glyoxalase/bleomycin resistance protein/dioxygenase rbh
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ADG10858.1}; Flags: Precursor;; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_expt_500_p_scaffold_488_15
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14076..14492
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. AP49 RepID=J2WHW7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJK82300.1}; Flags: Precursor;; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
antibiotic biosynthesis monooxygenase
SCNpilot_expt_500_p_scaffold_488_16
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14543..15448)
DNA (906bp) protein (302aa)
Transcriptional regulator, LysR family n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IE68_XANP2 rbh
LysR family transcriptional regulator rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABS66311.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_expt_500_p_scaffold_488_17
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15740..16999
DNA (1260bp) protein (420aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI000379F17E rbh
permease rbh
Permease protein {ECO:0000313|EMBL:ACM30795.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_500_p_scaffold_488_18
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17040..17453
DNA (414bp) protein (138aa)
Polyketide cyclase / dehydrase and lipid transport n=1 Tax=Novosphingobium sp. AP12 RepID=J2PZW9_9SPHN
Polyketide cyclase / dehydrase and lipid transport {ECO:0000313|EMBL:EJL33407.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_488_19
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17727..18671)
DNA (945bp) protein (315aa)
Transcriptional regulator, AraC family n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZHR7_GLUDA rbh
AraC family transcriptional regulator rbh
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ACI52545.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
SCNpilot_expt_500_p_scaffold_488_20
Acidomonas methanolica, Acidomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18732..19481
DNA (750bp) protein (250aa)
dehydrogenase n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B58D51 rbh
Oxidoreductase/short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:GAJ28752.1}; TaxID=1231351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidomonas.;" source="Acidomonas methanolica NBRC 104435.;"
short-chain dehydrogenase/reductase SDR rbh
SCNpilot_expt_500_p_scaffold_488_21
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19733..21967
DNA (2235bp) protein (745aa)
histidine kinase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6E5B4 rbh
Uncharacterized protein {ECO:0000313|EMBL:AJP74290.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
diguanylate cyclase/phosphodiesterase
SCNpilot_expt_500_p_scaffold_488_22
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23215..24579)
DNA (1365bp) protein (455aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
two-component system sensor histidine kinase CpxA n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC9F4 rbh
cpxA; two-component system sensor histidine kinase CpxA rbh
SCNpilot_expt_500_p_scaffold_488_23
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24585..25319)
DNA (735bp) protein (245aa)
transcriptional regulator n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC9F5 rbh
Uncharacterized protein {ECO:0000313|EMBL:AHE56271.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
ompR; two-component system phosphate regulon response regulator OmpR; K02483 two-component system, OmpR family, response regulator rbh
SCNpilot_expt_500_p_scaffold_488_24
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25470..25865
DNA (396bp) protein (132aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC9F6
Uncharacterized protein {ECO:0000313|EMBL:CCW15740.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_488_25
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25934..26359
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S2P8_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH50305.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_500_p_scaffold_488_26
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26502..28067)
DNA (1566bp) protein (522aa)
Benzoylformate decarboxylase {ECO:0000313|EMBL:KHL24901.1}; EC=4.1.1.7 {ECO:0000313|EMBL:KHL24901.1};; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
benzoylformate decarboxylase; K01576 benzoylformate decarboxylase [EC:4.1.1.7]
Benzoylformate decarboxylase n=1 Tax=Burkholderia multivorans (strain ATCC 17616 / 249) RepID=A9AGG7_BURM1
SCNpilot_expt_500_p_scaffold_488_27
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28077..29132)
DNA (1056bp) protein (352aa)
2-amino-3-carboxymuconate-6-semialdehyde decarboxylase {ECO:0000313|EMBL:GAO54732.1}; EC=4.1.1.45 {ECO:0000313|EMBL:GAO54732.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
amidohydrolase; K14333 2,3-dihydroxybenzoate decarboxylase [EC:4.1.1.46] rbh
amidohydrolase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B519D0 rbh
SCNpilot_expt_500_p_scaffold_488_28
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29220..31622)
DNA (2403bp) protein (801aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI000372227B rbh
Colicin I receptor {ECO:0000313|EMBL:AKH42954.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
TonB-dependent receptor
SCNpilot_expt_500_p_scaffold_488_29
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31650..32873)
DNA (1224bp) protein (408aa)
Putative aromatic acid transporter n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IM84_9SPHN rbh
putative aromatic acid transporter; K08195 MFS transporter, AAHS family, 4-hydroxybenzoate transporter rbh
Putative aromatic acid transporter {ECO:0000313|EMBL:BAK65339.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_500_p_scaffold_488_30
Rhodococcus sp. B7740, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33001..33672
DNA (672bp) protein (224aa)
Uncharacterized protein {ECO:0000313|EMBL:AJW41045.1}; TaxID=1564114 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. B7740.;"
Displaying items 1-30 of 40 in total

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