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SCNpilot_expt_500_p_scaffold_7

Search features with annotation key words

Displaying items 1-30 of 357 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_7_1
Burkholderia sp. AU4i, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(76..387)
DNA (312bp) protein (104aa)
Mobile element protein n=1 Tax=Burkholderia vietnamiensis AU4i RepID=U2H8W7_BURVI
Mobile element protein {ECO:0000313|EMBL:ERJ34623.1}; TaxID=1335308 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia sp. AU4i.;"
transposase
SCNpilot_expt_500_p_scaffold_7_2
Burkholderia sp. AU4i, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(384..686)
DNA (303bp) protein (101aa)
Mobile element protein n=1 Tax=Burkholderia vietnamiensis AU4i RepID=U2H2M7_BURVI
Mobile element protein {ECO:0000313|EMBL:ERJ34624.1}; TaxID=1335308 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia sp. AU4i.;"
transposase IS3/IS911
SCNpilot_expt_500_p_scaffold_7_3
unknown

Not on your lists

775..1236
DNA (462bp) protein (154aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_7_4
unknown

Not on your lists

1372..2211
DNA (840bp) protein (280aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_7_5
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2336..5134)
DNA (2799bp) protein (933aa)
TPR repeat-containing serine/threonine protein kinase; K08884 serine/threonine protein kinase, bacterial [EC:2.7.11.1]
Uncharacterized protein {ECO:0000313|EMBL:AKC87484.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
Serine/threonine protein kinase id=2862879 bin=GWF1_Xanthomonadales_69_6 species=Frateuria aurantia genus=Frateuria taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
SCNpilot_expt_500_p_scaffold_7_6
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5131..5706)
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036B1C69
ECF subfamily RNA polymerase sigma-24 factor
Tax=GWF1_Xanthomonadales_69_6_curated
SCNpilot_expt_500_p_scaffold_7_7
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5836..7311
DNA (1476bp) protein (492aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000381067F
hypothetical protein
Tax=RBG_16_Betaproteobacteria_56_24_curated
SCNpilot_expt_500_p_scaffold_7_8
unknown

Not on your lists

7602..8777
DNA (1176bp) protein (392aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_7_9
Xanthomonas vesicatoria, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8774..9346)
DNA (573bp) protein (191aa)
Uncharacterized protein n=3 Tax=Xanthomonas RepID=Q8PHR4_XANAC
gpmB; Fructose-2,6-bisphosphatase
Fructose-2,6-bisphosphatase {ECO:0000313|EMBL:KHM90489.1}; TaxID=56460 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas vesicatoria.;"
SCNpilot_expt_500_p_scaffold_7_10
endosymbiont of Riftia pachyptila, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9340..10398)
DNA (1059bp) protein (353aa)
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00230, ECO:0000256|SAAS:SAAS00013344}; Short=NN:DBI PRT {ECO:0000256|HAMAP-Rule:MF_00230};; EC=2.4.2.21 {ECO:0000256|HAMAP-Rule:MF_00230, ECO:0000256|SAAS:SAAS00013328};; N(1)-alpha-phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00230}; TaxID=1048808 species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="endosymbiont of Riftia pachyptila (vent Ph05).;"
cobT; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC:2.4.2.21); K00768 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] rbh
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase n=1 Tax=endosymbiont of Riftia pachyptila (vent Ph05) RepID=G2DBW4_9GAMM rbh
SCNpilot_expt_500_p_scaffold_7_11
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10475..10990)
DNA (516bp) protein (172aa)
Bifunctional adenosylcobalamin biosynthesis protein {ECO:0000313|EMBL:CEM57237.1}; EC=2.7.1.156 {ECO:0000313|EMBL:CEM57237.1};; EC=2.7.7.62 {ECO:0000313|EMBL:CEM57237.1};; TaxID=340 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. campestris.;"
cobU; adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase (EC:2.7.7.62 2.7.1.156); K02231 adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
Bifunctional adenosylcobalamin biosynthesis protein CobP n=1 Tax=Xanthomonas campestris pv. raphani 756C RepID=G0CD14_XANCA
SCNpilot_expt_500_p_scaffold_7_12
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10978..13737)
DNA (2760bp) protein (920aa)
cobyric acid synthase; K02232 adenosylcobyric acid synthase [EC:6.3.5.10]
Cobyric acid synthase n=2 Tax=Xanthomonas campestris RepID=Q4UXQ6_XANC8
Cobyric acid synthase {ECO:0000256|SAAS:SAAS00231811}; TaxID=190485 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 /; NCPPB 528 / LMG 568 / P 25).;"
SCNpilot_expt_500_p_scaffold_7_13
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13805..14713)
DNA (909bp) protein (303aa)
cobD; cobalamin biosynthesis protein (EC:6.3.1.10); K02227 adenosylcobinamide-phosphate synthase [EC:6.3.1.10] rbh
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002FCBC43 rbh
Cobalamin biosynthesis protein CobD {ECO:0000256|HAMAP-Rule:MF_00024}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
SCNpilot_expt_500_p_scaffold_7_14
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14735..15352)
DNA (618bp) protein (206aa)
cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase (EC:2.5.1.17)
cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase n=1 Tax=Dyella japonica RepID=UPI0002E98361 rbh
Cob(I)yrinic acid a,c-diamide adenosyltransferase {ECO:0000313|EMBL:AIF47031.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
SCNpilot_expt_500_p_scaffold_7_15
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15349..15645)
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI00036A8D66
Membrane protein {ECO:0000313|EMBL:AHX14530.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
SCNpilot_expt_500_p_scaffold_7_16
RBG_16_Gamma2_64_11_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16009..17856)
DNA (1848bp) protein (616aa)
Vitamin B12 transporter BtuB n=1 Tax=endosymbiont of Tevnia jerichonana (vent Tica) RepID=G2FCV3_9GAMM rbh
TonB-dependent vitamin B12 receptor rbh
Tax=RBG_16_Gamma2_64_11_curated
SCNpilot_expt_500_p_scaffold_7_17
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18246..19919)
DNA (1674bp) protein (558aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000374DF86 rbh
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
DNA replication and repair protein RecN
SCNpilot_expt_500_p_scaffold_7_18
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20012..21076
DNA (1065bp) protein (355aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003753DC3 rbh
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
heat-inducible transcription repressor HrcA
SCNpilot_expt_500_p_scaffold_7_19
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21180..21719
DNA (540bp) protein (180aa)
Protein GrpE n=1 Tax=Rhodanobacter sp. 115 RepID=I4VIQ7_9GAMM
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
molecular chaperone GrpE (heat shock protein)
SCNpilot_expt_500_p_scaffold_7_20
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21842..23755
DNA (1914bp) protein (638aa)
molecular chaperone DnaK n=1 Tax=Dyella ginsengisoli RepID=UPI0003495AD0 rbh
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
chaperone protein DnaK rbh
SCNpilot_expt_500_p_scaffold_7_21
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23867..24994
DNA (1128bp) protein (376aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036901CD rbh
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
chaperone protein DnaJ
SCNpilot_expt_500_p_scaffold_7_22
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25400..25912)
DNA (513bp) protein (171aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036BCD42
Uncharacterized protein {ECO:0000313|EMBL:KFN45277.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
polyhydroxyalcanoate granule-associated protein
SCNpilot_expt_500_p_scaffold_7_23
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26069..27334)
DNA (1266bp) protein (422aa)
lectin subunit Beta n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B6EB90 rbh
Uncharacterized protein {ECO:0000313|EMBL:KFN45276.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
lectin subunit Beta rbh
SCNpilot_expt_500_p_scaffold_7_24
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27423..27704)
DNA (282bp) protein (94aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL37956.1}; TaxID=1121014 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
Putative polyhydroxyalkanoic acid system protein id=2810096 bin=GWF1_Xanthomonadales_69_6 species=Catenibacterium mitsuokai genus=Catenibacterium taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
hypothetical protein
SCNpilot_expt_500_p_scaffold_7_25
R_Gammaproteobacteria_56_15, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27858..28547
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Turneriella parva (strain ATCC BAA-1111 / DSM 21527 / NCTC 11395 / H) RepID=I4B3G3_TURPD
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_56_15_curated
SCNpilot_expt_500_p_scaffold_7_26
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

28534..31230
DNA (2697bp) protein (899aa)
serine/threonin protein kinase id=24548980 bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
serine/threonine protein kinase
Tax=RBG_16_Acidobacteria_70_10_curated
SCNpilot_expt_500_p_scaffold_7_27
Hyphomonas sp. L-53-1-40, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31233..32351
DNA (1119bp) protein (373aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ62862.1}; TaxID=1207058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas sp. L-53-1-40.;"
SCNpilot_expt_500_p_scaffold_7_28
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32414..33301
DNA (888bp) protein (296aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000376B1B8
Uncharacterized protein {ECO:0000313|EMBL:KFN44458.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
FHA domain-containing protein
SCNpilot_expt_500_p_scaffold_7_29
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33424..34089)
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003812524
Sulfoxide reductase heme-binding subunit YedZ {ECO:0000256|HAMAP-Rule:MF_01207}; Flavocytochrome YedZ {ECO:0000256|HAMAP-Rule:MF_01207}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
sulfite oxidase subunit YedZ
SCNpilot_expt_500_p_scaffold_7_30
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34089..35072)
DNA (984bp) protein (328aa)
Sulfoxide reductase catalytic subunit YedY {ECO:0000256|HAMAP-Rule:MF_01206, ECO:0000256|SAAS:SAAS00016472}; EC=1.8.-.- {ECO:0000256|HAMAP-Rule:MF_01206, ECO:0000256|SAAS:SAAS00016459};; Flags: Precursor;; TaxID=1121014 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037370D1 rbh
oxidoreductase molybdopterin binding protein; K07147 rbh
Displaying items 1-30 of 357 in total

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