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SCNpilot_expt_500_p_scaffold_55

Search features with annotation key words

Displaying items 1-30 of 158 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_55_1
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(350..2470)
DNA (2121bp) protein (707aa)
Dipeptidyl aminopeptidase/acylaminoacyl peptidase n=1 Tax=Rhodanobacter denitrificans RepID=I4WIX2_9GAMM
Peptidase S9 {ECO:0000313|EMBL:GAN45244.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
dipeptidyl aminopeptidase/acylaminoacyl peptidase
SCNpilot_expt_500_p_scaffold_55_2
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2539..4473)
DNA (1935bp) protein (645aa)
peptide transporter n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B7BA95 rbh
Peptide transporter {ECO:0000313|EMBL:KFN45019.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
oligopeptide transporter
SCNpilot_expt_500_p_scaffold_55_3
unknown

Not on your lists

comp(4656..5153)
DNA (498bp) protein (166aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_55_4
unknown

Not on your lists

5366..5761
DNA (396bp) protein (132aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_55_5
RBG_16_Chloroflexi_47_49_curated, Chloroflexi, Bacteria

Not on your lists

5880..7385
DNA (1506bp) protein (502aa)
Polymorphic outer membrane protein n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9B1S2_HERA2
polymorphic outer membrane protein
Tax=RBG_16_Chloroflexi_47_49_curated
SCNpilot_expt_500_p_scaffold_55_6
unknown

Not on your lists

comp(7582..8034)
DNA (453bp) protein (151aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_55_7
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8049..8441)
DNA (393bp) protein (131aa)
hypothetical protein n=1 Tax=Chitiniphilus shinanonensis RepID=UPI00037C1DEB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACF53004.1}; TaxID=391008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain R551-3).;"
SCNpilot_expt_500_p_scaffold_55_8
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8656..9315)
DNA (660bp) protein (220aa)
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI000362D475
Uncharacterized protein {ECO:0000313|EMBL:KFN48684.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_55_9
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9571..11391
DNA (1821bp) protein (607aa)
Amino acid/peptide transporter n=1 Tax=Xanthomonas translucens DAR61454 RepID=L7GT98_XANCT
Amino acid/peptide transporter {ECO:0000313|EMBL:ELQ08999.1}; TaxID=1205753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens DAR61454.;"
XALc; peptide transporter; K03305 proton-dependent oligopeptide transporter, POT family
SCNpilot_expt_500_p_scaffold_55_10
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11372..12499)
DNA (1128bp) protein (376aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002D6AED4
Oxidoreductase {ECO:0000313|EMBL:EYR69900.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
FAD dependent oxidoreductase
SCNpilot_expt_500_p_scaffold_55_11
Pseudomonas fulva, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12699..13823
DNA (1125bp) protein (375aa)
dehydrogenase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002DC8B79
dehydrogenase
Putative dehydrogenase {ECO:0000313|EMBL:AEF21119.1}; Flags: Precursor;; TaxID=743720 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fulva (strain 12-X).;"
SCNpilot_expt_500_p_scaffold_55_12
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13912..15894)
DNA (1983bp) protein (661aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0003765F0A
Prolyl oligopeptidase {ECO:0000313|EMBL:GAN45246.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
dipeptidyl aminopeptidase/acylaminoacyl peptidase
SCNpilot_expt_500_p_scaffold_55_13
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16045..17481)
DNA (1437bp) protein (479aa)
mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase (EC:2.7.7.22); K00971 mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035C7AA2 rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
SCNpilot_expt_500_p_scaffold_55_14
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17532..18449)
DNA (918bp) protein (306aa)
dTDP-4-dehydrorhamnose reductase; K00067 dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035DF419 rbh
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:GAN45247.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
SCNpilot_expt_500_p_scaffold_55_15
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18555..19112)
DNA (558bp) protein (186aa)
dTDP-4-dehydrorhamnose 3,5-epimerase (EC:5.1.3.13)
dTDP-4-dehydrorhamnose 3,5-epimerase n=1 Tax=Rhodanobacter denitrificans RepID=I4WSP6_9GAMM
dTDP-4-dehydrorhamnose 3,5-epimerase {ECO:0000313|EMBL:EIL98439.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SCNpilot_expt_500_p_scaffold_55_16
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19109..19996)
DNA (888bp) protein (296aa)
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
Glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24)
glucose-1-phosphate thymidylyltransferase n=1 Tax=Rudaea cellulosilytica RepID=UPI00036B41B7
SCNpilot_expt_500_p_scaffold_55_17
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20063..21118)
DNA (1056bp) protein (352aa)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
dTDP-glucose 4,6-dehydratase (EC:4.2.1.46)
dTDP-glucose 4,6-dehydratase n=1 Tax=mine drainage metagenome RepID=T0ZJS2_9ZZZZ rbh
SCNpilot_expt_500_p_scaffold_55_18
Streptomyces katrae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21313..22707
DNA (1395bp) protein (465aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037A6C57
Uncharacterized protein {ECO:0000313|EMBL:KJY31239.1}; TaxID=68223 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces katrae.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_55_19

Not on your lists

comp(22746..23483)
DNA (738bp) protein (246aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI00030A2973
Uncharacterized protein {ECO:0000313|EMBL:KKO09037.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_55_20
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23873..24400)
DNA (528bp) protein (176aa)
single-stranded DNA-binding protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036A6854
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
ssb; single-stranded DNA-binding protein
SCNpilot_expt_500_p_scaffold_55_21
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24643..25647
DNA (1005bp) protein (335aa)
Geranylgeranyl pyrophosphate synthase n=1 Tax=Rhodanobacter denitrificans RepID=I4WT73_9GAMM
geranylgeranyl pyrophosphate synthase
Geranylgeranyl pyrophosphate synthase {ECO:0000313|EMBL:AGG87817.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_55_22
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25688..26155
DNA (468bp) protein (156aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000376A368
Uncharacterized protein {ECO:0000313|EMBL:GAN45919.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_55_23
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26152..26739
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037B440F
hypothetical protein; K09975 hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
SCNpilot_expt_500_p_scaffold_55_24
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26765..27451)
DNA (687bp) protein (229aa)
PKHD-type hydroxylase N790_03605 {ECO:0000256|HAMAP-Rule:MF_00657}; EC=1.14.11.- {ECO:0000256|HAMAP-Rule:MF_00657};; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
pkhd-type hydroxylase piuc; K07336 PKHD-type hydroxylase [EC:1.14.11.-]
Fe(II)-dependent oxygenase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B4F9E3 rbh
SCNpilot_expt_500_p_scaffold_55_25
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27661..30117)
DNA (2457bp) protein (819aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003691058 rbh
TonB-denpendent receptor {ECO:0000313|EMBL:EYR67172.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein rbh
SCNpilot_expt_500_p_scaffold_55_26
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30432..32054)
DNA (1623bp) protein (541aa)
flavodoxin/nitric oxide synthase; K00380 sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2] rbh
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI00035DA632 rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR67178.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
SCNpilot_expt_500_p_scaffold_55_27
Cupriavidus sp. SK-4, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32051..33046)
DNA (996bp) protein (332aa)
Thiamine biosynthesis lipoprotein ApbE n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3R3N5_RALPI rbh
Thiamine biosynthesis protein ApbE {ECO:0000313|EMBL:EYS97208.1}; TaxID=574750 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-4.;"
ApbE family protein 1; K03734 thiamine biosynthesis lipoprotein rbh
SCNpilot_expt_500_p_scaffold_55_28
Xanthomonas citri, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33093..33899)
DNA (807bp) protein (269aa)
Nickel uptake substrate-specific transmembrane region family protein n=1 Tax=Xanthomonas citri pv. mangiferaeindicae LMG 941 RepID=H8FHW9_XANCI rbh
Nickel uptake substrate-specific transmembrane region family protein {ECO:0000313|EMBL:CCG37956.1}; TaxID=1156940 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas citri pv. mangiferaeindicae LMG 941.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_55_29
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34018..34557)
DNA (540bp) protein (180aa)
Putative exported protein n=3 Tax=Bordetella bronchiseptica RepID=K0MH34_BORBM
hypothetical protein
Periplasmic protein, PF10029 family {ECO:0000313|EMBL:KDD51208.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
SCNpilot_expt_500_p_scaffold_55_30
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34568..35227)
DNA (660bp) protein (220aa)
PepSY domain protein n=1 Tax=Achromobacter piechaudii ATCC 43553 RepID=D4XFG7_9BURK
PepSY domain protein {ECO:0000313|EMBL:EFF74392.1}; TaxID=742159 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii ATCC 43553.;"
PepSY-associated TM helix family protein 7; K09939 hypothetical protein
Displaying items 1-30 of 158 in total

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