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SCNpilot_expt_500_p_scaffold_364

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_364_1
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..811)
DNA (810bp) protein (270aa)
Adenosylhomocysteinase {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548}; EC=3.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548};; S-adenosyl-L-homocysteine hydrolase {ECO:0000256|HAMAP-Rule:MF_00563}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
adenosylhomocysteinase (EC:3.3.1.1); K01251 adenosylhomocysteinase [EC:3.3.1.1]
S-adenosyl-L-homocysteine hydrolase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B390FD
SCNpilot_expt_500_p_scaffold_364_2
unknown

Not on your lists

1235..2005
DNA (771bp) protein (257aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_364_3
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2312..5692
DNA (3381bp) protein (1127aa)
NHL repeat containing protein n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M5Z5_GEODF
High-affinity leucine-specific transport system, periplasmic binding protein LivK {ECO:0000313|EMBL:KFE67748.1}; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
NHL repeat containing protein
SCNpilot_expt_500_p_scaffold_364_4
Amycolatopsis orientalis, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5781..6245)
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=Nocardiopsis alba RepID=UPI00037F6B3A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGM07163.1}; TaxID=1156913 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis orientalis HCCB10007.;"
SCNpilot_expt_500_p_scaffold_364_5
unknown

Not on your lists

6489..7130
DNA (642bp) protein (214aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_364_6
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7285..7503
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Ralstonia pickettii (strain 12D) RepID=C6BIM4_RALP1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS64697.1}; Flags: Precursor;; TaxID=428406 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii (strain 12D).;"
SCNpilot_expt_500_p_scaffold_364_7
Capsaspora owczarzaki, Capsaspora, Ichthyosporea, Eukaryota

Not on your lists

comp(7572..8909)
DNA (1338bp) protein (446aa)
Uncharacterized protein n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) RepID=S4AA53_CAPO3
Uncharacterized protein {ECO:0000313|EMBL:KJE91757.1}; TaxID=595528 species="Eukaryota; Ichthyosporea; Capsaspora.;" source="Capsaspora owczarzaki (strain ATCC 30864).;"
peptidase M28
SCNpilot_expt_500_p_scaffold_364_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9138..11888)
DNA (2751bp) protein (917aa)
TonB-dependent receptor n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2S2_9GAMM
TonB-dependent receptor {ECO:0000313|EMBL:EIL93763.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
TonB-dependent receptor
SCNpilot_expt_500_p_scaffold_364_9
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12275..13222
DNA (948bp) protein (316aa)
yegU; putative ADP-ribosylglycohydrolase; K05521 ADP-ribosylglycohydrolase [EC:3.2.-.-] rbh
Putative ADP-ribosylglycohydrolase n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MPX4_CORCM rbh
Putative ADP-ribosylglycohydrolase {ECO:0000313|EMBL:AFE10877.1}; TaxID=1144275 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086; / M2) (Myxococcus coralloides).;"
SCNpilot_expt_500_p_scaffold_364_10
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13463..14533
DNA (1071bp) protein (357aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI0003669E95
Uncharacterized protein {ECO:0000313|EMBL:KFN42557.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
Sensor protein lytS
SCNpilot_expt_500_p_scaffold_364_11
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

14530..15243
DNA (714bp) protein (238aa)
LytTR family transcriptional regulator n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B62C31
Uncharacterized protein {ECO:0000313|EMBL:KIJ71218.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
lytT1; Sensory transduction protein lytT
SCNpilot_expt_500_p_scaffold_364_12
Pseudomonas alcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15268..15966)
DNA (699bp) protein (233aa)
Putative glutathione S-transferase n=1 Tax=Pseudomonas alcaligenes NBRC 14159 RepID=U2ZBA7_PSEAC rbh
glutathione S transferase-related protein rbh
Putative glutathione S-transferase {ECO:0000313|EMBL:GAD65011.1}; TaxID=1215092 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas alcaligenes NBRC 14159.;"
SCNpilot_expt_500_p_scaffold_364_13
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16292..17650)
DNA (1359bp) protein (453aa)
Acetate CoA-transferase YdiF {ECO:0000256|PIRNR:PIRNR000858}; EC=2.8.3.8 {ECO:0000256|PIRNR:PIRNR000858};; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
succinyl-CoA:3-ketoacid-CoA transferase n=1 Tax=Dyella ginsengisoli RepID=UPI00034C924E
3-oxoacid CoA-transferase, B subunit/3-oxoacid CoA-transferase, A subunit
SCNpilot_expt_500_p_scaffold_364_14
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17830..20043)
DNA (2214bp) protein (738aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000380510F rbh
Uncharacterized protein {ECO:0000313|EMBL:AHY58589.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
alpha/beta hydrolase fold protein rbh
SCNpilot_expt_500_p_scaffold_364_15
Herpetosiphon aurantiacus, Herpetosiphon, Herpetosiphonales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

20332..23871
DNA (3540bp) protein (1180aa)
Peptidase S8 and S53 subtilisin kexin sedolisin n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9AZ09_HERA2
peptidase S8/S53 subtilisin kexin sedolisin
Peptidase S8 and S53 subtilisin kexin sedolisin {ECO:0000313|EMBL:ABX07049.1}; Flags: Precursor;; TaxID=316274 species="Bacteria; Chloroflexi; Chloroflexia; Herpetosiphonales; Herpetosiphonaceae; Herpetosiphon.;" source="Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785).;"
SCNpilot_expt_500_p_scaffold_364_16
Arcobacter nitrofigilis, Arcobacter, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24226..26559)
DNA (2334bp) protein (778aa)
TonB-dependent siderophore receptor n=1 Tax=Arcobacter nitrofigilis (strain ATCC 33309 / DSM 7299 / LMG 7604 / NCTC 12251 / CI) RepID=D5V4L7_ARCNC
TonB-dependent siderophore receptor
TonB-dependent siderophore receptor {ECO:0000313|EMBL:ADG92922.1}; Flags: Precursor;; TaxID=572480 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Arcobacter.;" source="Arcobacter nitrofigilis (strain ATCC 33309 / DSM 7299 / LMG 7604 /; NCTC 12251 / CI) (Campylobacter nitrofigilis).;"
SCNpilot_expt_500_p_scaffold_364_17
Thalassospira xiamenensis, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26556..27506)
DNA (951bp) protein (317aa)
FecR, iron siderophore sensor protein n=1 Tax=Thalassospira xiamenensis M-5 = DSM 17429 RepID=K2M794_9PROT
FecR, iron siderophore sensor protein {ECO:0000313|EMBL:AJD53196.1}; TaxID=1123366 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira xiamenensis M-5 = DSM 17429.;"
putative transmembrane sensor
SCNpilot_expt_500_p_scaffold_364_18
Pseudomonas denitrificans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27589..28128)
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=Methylosarcina fibrata RepID=UPI00035D3DA0
putative DNA-binding protein
Putative DNA-binding protein {ECO:0000313|EMBL:AGI23527.1}; TaxID=1294143 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas denitrificans ATCC 13867.;"
SCNpilot_expt_500_p_scaffold_364_19
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28208..29014)
DNA (807bp) protein (269aa)
Putative periplasmic protein TonB, links inner and outer membranes n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6EWI2_9PROT
Putative periplasmic protein TonB, links inner and outer membranes {ECO:0000313|EMBL:CDK97635.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
tonb family protein; K03832 periplasmic protein TonB
SCNpilot_expt_500_p_scaffold_364_20
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29195..30739
DNA (1545bp) protein (515aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036E23A0
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADE16669.1}; Flags: Precursor;; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
SCNpilot_expt_500_p_scaffold_364_21
unknown

Not on your lists

30932..31210
DNA (279bp) protein (93aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_364_22
RBG_16_Gallionellales_57_15_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31598..33100
DNA (1503bp) protein (501aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036E23A0
hypothetical protein
Tax=RBG_16_Gallionellales_57_15_curated
SCNpilot_expt_500_p_scaffold_364_23
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(33338..36130)
DNA (2793bp) protein (931aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IST1_KORVE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF40069.1}; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
SCNpilot_expt_500_p_scaffold_364_24
unknown

Not on your lists

comp(36428..37402)
DNA (975bp) protein (325aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_364_25
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37750..38175
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000381A3BD
hypothetical protein; K09980 hypothetical protein
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_expt_500_p_scaffold_364_26
unknown

Not on your lists

38184..38801
DNA (618bp) protein (206aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_364_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38791..39147
DNA (357bp) protein (119aa)
hypothetical protein n=1 Tax=Chitiniphilus shinanonensis RepID=UPI00036EC603
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU36571.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_p_scaffold_364_28
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39144..39767
DNA (624bp) protein (208aa)
hypothetical protein n=1 Tax=Chitiniphilus shinanonensis RepID=UPI000363466A
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
SCNpilot_expt_500_p_scaffold_364_29
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40048..42138
DNA (2091bp) protein (697aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037299DA
hypothetical protein
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_expt_500_p_scaffold_364_30
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42390..47462
DNA (5073bp) protein (1691aa)
hypothetical protein n=1 Tax=Chitiniphilus shinanonensis RepID=UPI00037E7D3E
aaa ATPase
Tax=BJP_08E140C01_Burkholderiales_65_30
Displaying items 1-30 of 33 in total

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