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SCNpilot_expt_500_p_scaffold_438

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_438_1
Pimelobacter simplex, Pimelobacter, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1..2763
DNA (2763bp) protein (921aa)
APHP domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XF53_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AIY16549.2}; TaxID=2045 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;"
outer membrane adhesin-like protein
SCNpilot_expt_500_p_scaffold_438_2
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2880..4712
DNA (1833bp) protein (611aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000381A487 rbh
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:KGI77289.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
ATP-dependent DNA helicase RecQ
SCNpilot_expt_500_p_scaffold_438_3
unknown

Not on your lists

4858..5502
DNA (645bp) protein (215aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_438_4
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5331..5870)
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI00036E54EB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCP09243.1}; TaxID=1118156 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia SKK35.;"
SCNpilot_expt_500_p_scaffold_438_5
unknown

Not on your lists

comp(6147..8003)
DNA (1857bp) protein (619aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_438_6
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8146..8820)
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0T2R9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE00746.1}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_438_7
RIFOXYB1_FULL_Caulobacterales_67_16_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8980..10299)
DNA (1320bp) protein (440aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QRC0_BREDI rbh
conserved exported hypothetical protein
Tax=RIFOXYB1_FULL_Caulobacterales_67_16_curated
SCNpilot_expt_500_p_scaffold_438_8
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10521..12911
DNA (2391bp) protein (797aa)
helicase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00037D408B
Helicase {ECO:0000313|EMBL:AHY60875.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
DEAD/DEAH box helicase; K06877 DEAD/DEAH box helicase domain-containing protein
SCNpilot_expt_500_p_scaffold_438_9
Xanthomonas albilineans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12908..14026
DNA (1119bp) protein (373aa)
hypothetical protein n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI000373253A
hypothetical protein; K07502 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBA17592.1}; TaxID=380358 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas albilineans (strain GPE PC73 / CFBP 7063).;"
SCNpilot_expt_500_p_scaffold_438_10
unknown

Not on your lists

comp(14363..14638)
DNA (276bp) protein (92aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_438_11
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14795..15523)
DNA (729bp) protein (243aa)
LytTR family transcriptional regulator n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B62C31
lytT1; Sensory transduction protein lytT
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
SCNpilot_expt_500_p_scaffold_438_12
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15520..16611)
DNA (1092bp) protein (364aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI0003669E95
Uncharacterized protein {ECO:0000313|EMBL:KFN42557.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
Sensor protein lytS
SCNpilot_expt_500_p_scaffold_438_13
Gallaecimonas xiamenensis, Gallaecimonas, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17039..17446
DNA (408bp) protein (136aa)
Glutaredoxin n=1 Tax=Gallaecimonas xiamenensis 3-C-1 RepID=K2ICT6_9GAMM
Glutaredoxin {ECO:0000313|EMBL:EKE67756.1}; TaxID=745411 species="Bacteria; Proteobacteria; Gammaproteobacteria; Gallaecimonas.;" source="Gallaecimonas xiamenensis 3-C-1.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_438_14
unknown

Not on your lists

17502..17717
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_438_15
Gynuella sunshinyii, Gynuella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17783..18022)
DNA (240bp) protein (80aa)
Putative uncharacterized protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VPT6_CAUST
Uncharacterized protein {ECO:0000313|EMBL:AJQ93687.1}; TaxID=1445510 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; unclassified Oceanospirillales; Gynuella.;" source="Gynuella sunshinyii YC6258.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_438_16
Gynuella sunshinyii, Gynuella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18019..18474)
DNA (456bp) protein (152aa)
Transcriptional regulator, MarR family n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VPT5_CAUST
Transcriptional regulator {ECO:0000313|EMBL:AJQ93686.1}; TaxID=1445510 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; unclassified Oceanospirillales; Gynuella.;" source="Gynuella sunshinyii YC6258.;"
MarR family transcriptional regulator
SCNpilot_expt_500_p_scaffold_438_17
unknown

Not on your lists

18664..18909
DNA (246bp) protein (82aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_438_18
unknown

Not on your lists

18995..19519
DNA (525bp) protein (175aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_438_19
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19555..19938)
DNA (384bp) protein (128aa)
Glutathione-dependent formaldehyde-activating, GFA family protein n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FEC3_STIAD
glutathione-dependent formaldehyde-activating protein
Glutathione-dependent formaldehyde-activating, GFA family protein {ECO:0000313|EMBL:ADO73893.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
SCNpilot_expt_500_p_scaffold_438_20
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19976..20287)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia Ab55555 RepID=J7V7W7_STEMA
putative transmembrane protein
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
SCNpilot_expt_500_p_scaffold_438_21
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20292..20495)
DNA (204bp) protein (68aa)
Putative membrane protein {ECO:0000313|EMBL:KGQ18773.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
Putative uncharacterized protein id=2974186 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
hypothetical protein
SCNpilot_expt_500_p_scaffold_438_22
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20492..21913)
DNA (1422bp) protein (474aa)
Transcriptional regulator, GntR family n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SDS5_METPP
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ABM93714.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
SCNpilot_expt_500_p_scaffold_438_23
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21918..23204)
DNA (1287bp) protein (429aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036C35DC rbh
cytochrome c, mono- and diheme variants family
Cytochrome c, mono-and diheme variants family {ECO:0000313|EMBL:AGG90704.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_438_24
Burkholderia thailandensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23201..23917)
DNA (717bp) protein (239aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003668C1C
cytochrome c4
Cytochrome c4, putative {ECO:0000313|EMBL:ABC36979.1}; TaxID=271848 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 /; CIP 106301).;"
SCNpilot_expt_500_p_scaffold_438_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24025..24381)
DNA (357bp) protein (119aa)
PAS domain S-box n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DBL1_SINAD
PAS domain-containing protein
Multi-sensor hybrid histidine kinase {ECO:0000313|EMBL:ADU37226.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_p_scaffold_438_26
Thermobispora bispora, Thermobispora, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24495..24860)
DNA (366bp) protein (122aa)
UspA domain protein n=1 Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6YBC0_THEBD
UspA domain-containing protein
UspA domain protein {ECO:0000313|EMBL:ADG88480.1}; TaxID=469371 species="Bacteria; Actinobacteria; Actinobacteria incertae sedis; Thermobispora.;" source="Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 /; JCM 10125 / NBRC 14880 / R51).;"
SCNpilot_expt_500_p_scaffold_438_27
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25036..25794
DNA (759bp) protein (253aa)
Crp/Fnr family transcriptional regulator n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYU1_9GAMM
Crp/Fnr family transcriptional regulator {ECO:0000313|EMBL:EIL92382.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
cAMP-binding protein
SCNpilot_expt_500_p_scaffold_438_28
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25947..28232
DNA (2286bp) protein (762aa)
nitric oxide reductase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B4A025 rbh
Uncharacterized protein {ECO:0000313|EMBL:KFN45000.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
nitric oxide reductase large subunit rbh
SCNpilot_expt_500_p_scaffold_438_29
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28229..29464
DNA (1236bp) protein (412aa)
NnrS family protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE55_9GAMM
NnrS family protein {ECO:0000313|EMBL:EIL97746.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
uncharacterized protein involved in response to NO
SCNpilot_expt_500_p_scaffold_438_30
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29471..29860
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B4F223
Uncharacterized protein {ECO:0000313|EMBL:GAN45986.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein
Displaying items 1-30 of 44 in total

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