name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_500_p_scaffold_12_1
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
93..1085
|
Signal transduction histidine kinase n=1 Tax=Variovorax sp. CF313 RepID=J3CXM7_9BURK
rbh
Signal transduction histidine kinase {ECO:0000313|EMBL:EJL80361.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
signal transduction histidine kinase
rbh
|
|
SCNpilot_expt_500_p_scaffold_12_2
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
1166..3541
|
Transcriptional accessory protein n=1 Tax=Variovorax sp. CF313 RepID=J2TNR1_9BURK
rbh
Transcriptional accessory protein {ECO:0000313|EMBL:EJL80362.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
RNA binding S1 domain-containing protein; K06959 uncharacterized protein
rbh
|
|
SCNpilot_expt_500_p_scaffold_12_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3605..3862
|
Prevent-host-death family protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CMY2_VARPS
prevent-host-death family protein
Prevent-host-death family protein {ECO:0000313|EMBL:ACS19494.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
|
|
SCNpilot_expt_500_p_scaffold_12_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3870..4283
|
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
Ribonuclease VapC n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CMY1_VARPS
PilT protein domain-containing protein; K07062
|
|
SCNpilot_expt_500_p_scaffold_12_5
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
4280..5353
|
phospholipase n=1 Tax=Variovorax paradoxus RepID=UPI000374AB10
rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL80363.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
rbh
|
|
SCNpilot_expt_500_p_scaffold_12_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5317..5712)
|
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CX87_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL80364.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
|
|
SCNpilot_expt_500_p_scaffold_12_7
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5709..6083)
|
aminoacrylate peracid reductase n=1 Tax=Variovorax paradoxus RepID=UPI0003829532
Putative translation initiation inhibitor, yjgF family {ECO:0000313|EMBL:EJL80365.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
endoribonuclease L-PSP
|
|
SCNpilot_expt_500_p_scaffold_12_8
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6080..7594)
|
Efflux transporter, outer membrane factor lipoprotein, NodT family n=1 Tax=Variovorax sp. CF313 RepID=J3CXN1_9BURK
rbh
Efflux transporter, outer membrane factor lipoprotein, NodT family {ECO:0000313|EMBL:EJL80366.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
zneC; heavy metal cation tricomponent efflux outer membrane porin ZneC
|
|
SCNpilot_expt_500_p_scaffold_12_9
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7614..10709)
|
Heavy metal efflux pump, cobalt-zinc-cadmium n=1 Tax=Variovorax sp. CF313 RepID=J2TNR5_9BURK
rbh
Heavy metal efflux pump, cobalt-zinc-cadmium {ECO:0000313|EMBL:EJL80367.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
czcA; cobalt-zinc-cadmium resistance protein; K15726 cobalt-zinc-cadmium resistance protein CzcA
|
|
SCNpilot_expt_500_p_scaffold_12_10
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10702..12024)
|
secretion protein HylD n=1 Tax=Variovorax paradoxus RepID=UPI00036720A8
rbh
RND family efflux transporter, MFP subunit {ECO:0000313|EMBL:EJL80368.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
czcB; putative Co/Zn/Cd efflux system membrane fusion protein; K15727 cobalt-zinc-cadmium resistance protein CzcB
rbh
|
|
SCNpilot_expt_500_p_scaffold_12_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
12036..12743
|
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Variovorax sp. CF313 RepID=J3CX91_9BURK
rbh
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:EJL80369.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
DNA-binding response regulator
rbh
|
|
SCNpilot_expt_500_p_scaffold_12_12
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
12736..14145
|
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
RSp1043; two-component sensor histidine kinase transcription regulator protein (EC:2.7.3.-); K02484 two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
rbh
Signal transduction histidine kinase n=1 Tax=Variovorax sp. CF313 RepID=J2KJK3_9BURK
rbh
|
|
SCNpilot_expt_500_p_scaffold_12_13
unknown
|
Not on your lists |
14181..14291
|
This feature has no annotations |
|
SCNpilot_expt_500_p_scaffold_12_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(14260..14658)
|
N-acetyltransferase GCN5 n=1 Tax=Pandoraea sp. SD6-2 RepID=R7WYH0_9BURK
Variovorax paradoxus strain MEDvA23 contig_52, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ27841.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
putative acyltransferase; K02348 ElaA protein
|
|
SCNpilot_expt_500_p_scaffold_12_15
Herpetosiphon aurantiacus, Herpetosiphon, Herpetosiphonales, Chloroflexia, Chloroflexi, Bacteria
|
Not on your lists |
14811..15119
|
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035F1DCA
hypothetical protein
YCII-related {ECO:0000313|EMBL:ABX05148.1}; TaxID=316274 species="Bacteria; Chloroflexi; Chloroflexia; Herpetosiphonales; Herpetosiphonaceae; Herpetosiphon.;" source="Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785).;"
|
|
SCNpilot_expt_500_p_scaffold_12_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(15123..18557)
|
NodT family RND efflux system outer membrane lipoprotein (EC:2.4.1.12); K00694 cellulose synthase (UDP-forming) [EC:2.4.1.12]
rbh
RND efflux system, outer membrane lipoprotein, NodT family {ECO:0000313|EMBL:ACS20880.1}; EC=2.4.1.12 {ECO:0000313|EMBL:ACS20880.1};; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
RND transporter n=1 Tax=Variovorax paradoxus RepID=UPI00037AEBC8
rbh
|
|
SCNpilot_expt_500_p_scaffold_12_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(18545..19849)
|
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000362ADE8
rbh
hypothetical protein
rbh
Uncharacterized protein {ECO:0000313|EMBL:AGU51501.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_expt_500_p_scaffold_12_18
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(19892..21172)
|
multidrug transporter n=1 Tax=Variovorax paradoxus RepID=UPI000363E4F0
rbh
Multidrug resistance efflux pump {ECO:0000313|EMBL:EJL78130.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
rbh
|
|
SCNpilot_expt_500_p_scaffold_12_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(21328..21714)
|
type VI secretion protein n=1 Tax=Variovorax paradoxus RepID=UPI000371FDED
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGU49783.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_expt_500_p_scaffold_12_20
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(21748..22500)
|
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037D9C61
rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL80373.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
|
|
SCNpilot_expt_500_p_scaffold_12_21
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(22497..23633)
|
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003676535
rbh
Putative low-complexity protein {ECO:0000313|EMBL:EJL80374.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
pentapeptide repeats-containing protein
rbh
|
|
SCNpilot_expt_500_p_scaffold_12_22
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(23630..26269)
|
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035E667A
rbh
Putative low-complexity protein {ECO:0000313|EMBL:EJL80375.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
pentapeptide repeats-containing protein
rbh
|
|
SCNpilot_expt_500_p_scaffold_12_23
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(26288..26722)
|
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037A61D8
Uncharacterized protein {ECO:0000313|EMBL:EJL80376.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
|
|
SCNpilot_expt_500_p_scaffold_12_24
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(26731..29073)
|
type VI secretion protein Vgr n=1 Tax=Variovorax paradoxus RepID=UPI00035DBA47
rbh
Rhs element Vgr protein {ECO:0000313|EMBL:EJL80377.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
type VI secretion system vgr family protein
rbh
|
|
SCNpilot_expt_500_p_scaffold_12_25
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(29214..30350)
|
4-hydroxybutyrate dehydrogenase n=1 Tax=Variovorax paradoxus RepID=UPI0003766D7C
rbh
Alcohol dehydrogenase, class IV {ECO:0000313|EMBL:EJL80378.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
iron-containing alcohol dehydrogenase
rbh
|
|
SCNpilot_expt_500_p_scaffold_12_26
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
30485..31465
|
Alpha/beta hydrolase fold-3 domain protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V8X2_VARPE
rbh
alpha/beta hydrolase folD-3 domain-containing protein
rbh
Alpha/beta hydrolase fold-3 domain protein {ECO:0000313|EMBL:ADU37295.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_expt_500_p_scaffold_12_27
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
31462..32337
|
Acyl-CoA thioester hydrolase, YbgC/YbaW family n=1 Tax=Variovorax sp. CF313 RepID=J2KJL6_9BURK
rbh
Acyl-CoA thioester hydrolase, YbgC/YbaW family {ECO:0000313|EMBL:EJL80380.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
GCN5-like N-acetyltransferaser
rbh
|
|
SCNpilot_expt_500_p_scaffold_12_28
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(32352..33248)
|
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CXP3_9BURK
rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL80381.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
rbh
|
|
SCNpilot_expt_500_p_scaffold_12_29
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(33394..34329)
|
folate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI0003634A17
rbh
Folate-binding protein YgfZ {ECO:0000313|EMBL:EJL80382.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
folate-binding protein YgfZ; K06980
rbh
|
|
SCNpilot_expt_500_p_scaffold_12_30
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
34342..35469
|
aminodeoxychorismate lyase n=1 Tax=Variovorax paradoxus RepID=UPI0003812F65
rbh
YceG family protein {ECO:0000313|EMBL:EJL80383.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
|