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SCNpilot_expt_500_p_scaffold_12

Search features with annotation key words

Displaying items 1-30 of 344 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_12_1
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

93..1085
DNA (993bp) protein (331aa)
Signal transduction histidine kinase n=1 Tax=Variovorax sp. CF313 RepID=J3CXM7_9BURK rbh
Signal transduction histidine kinase {ECO:0000313|EMBL:EJL80361.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
signal transduction histidine kinase rbh
SCNpilot_expt_500_p_scaffold_12_2
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1166..3541
DNA (2376bp) protein (792aa)
Transcriptional accessory protein n=1 Tax=Variovorax sp. CF313 RepID=J2TNR1_9BURK rbh
Transcriptional accessory protein {ECO:0000313|EMBL:EJL80362.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
RNA binding S1 domain-containing protein; K06959 uncharacterized protein rbh
SCNpilot_expt_500_p_scaffold_12_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3605..3862
DNA (258bp) protein (86aa)
Prevent-host-death family protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CMY2_VARPS
prevent-host-death family protein
Prevent-host-death family protein {ECO:0000313|EMBL:ACS19494.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_500_p_scaffold_12_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3870..4283
DNA (414bp) protein (138aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
Ribonuclease VapC n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CMY1_VARPS
PilT protein domain-containing protein; K07062
SCNpilot_expt_500_p_scaffold_12_5
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4280..5353
DNA (1074bp) protein (358aa)
phospholipase n=1 Tax=Variovorax paradoxus RepID=UPI000374AB10 rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL80363.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_12_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5317..5712)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CX87_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL80364.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_expt_500_p_scaffold_12_7
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5709..6083)
DNA (375bp) protein (125aa)
aminoacrylate peracid reductase n=1 Tax=Variovorax paradoxus RepID=UPI0003829532
Putative translation initiation inhibitor, yjgF family {ECO:0000313|EMBL:EJL80365.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
endoribonuclease L-PSP
SCNpilot_expt_500_p_scaffold_12_8
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6080..7594)
DNA (1515bp) protein (505aa)
Efflux transporter, outer membrane factor lipoprotein, NodT family n=1 Tax=Variovorax sp. CF313 RepID=J3CXN1_9BURK rbh
Efflux transporter, outer membrane factor lipoprotein, NodT family {ECO:0000313|EMBL:EJL80366.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
zneC; heavy metal cation tricomponent efflux outer membrane porin ZneC
SCNpilot_expt_500_p_scaffold_12_9
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7614..10709)
DNA (3096bp) protein (1032aa)
Heavy metal efflux pump, cobalt-zinc-cadmium n=1 Tax=Variovorax sp. CF313 RepID=J2TNR5_9BURK rbh
Heavy metal efflux pump, cobalt-zinc-cadmium {ECO:0000313|EMBL:EJL80367.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
czcA; cobalt-zinc-cadmium resistance protein; K15726 cobalt-zinc-cadmium resistance protein CzcA
SCNpilot_expt_500_p_scaffold_12_10
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10702..12024)
DNA (1323bp) protein (441aa)
secretion protein HylD n=1 Tax=Variovorax paradoxus RepID=UPI00036720A8 rbh
RND family efflux transporter, MFP subunit {ECO:0000313|EMBL:EJL80368.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
czcB; putative Co/Zn/Cd efflux system membrane fusion protein; K15727 cobalt-zinc-cadmium resistance protein CzcB rbh
SCNpilot_expt_500_p_scaffold_12_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12036..12743
DNA (708bp) protein (236aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Variovorax sp. CF313 RepID=J3CX91_9BURK rbh
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:EJL80369.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
DNA-binding response regulator rbh
SCNpilot_expt_500_p_scaffold_12_12
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12736..14145
DNA (1410bp) protein (470aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
RSp1043; two-component sensor histidine kinase transcription regulator protein (EC:2.7.3.-); K02484 two-component system, OmpR family, sensor kinase [EC:2.7.13.3] rbh
Signal transduction histidine kinase n=1 Tax=Variovorax sp. CF313 RepID=J2KJK3_9BURK rbh
SCNpilot_expt_500_p_scaffold_12_13
unknown

Not on your lists

14181..14291
DNA (111bp) protein (37aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_12_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14260..14658)
DNA (399bp) protein (133aa)
N-acetyltransferase GCN5 n=1 Tax=Pandoraea sp. SD6-2 RepID=R7WYH0_9BURK
Variovorax paradoxus strain MEDvA23 contig_52, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ27841.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
putative acyltransferase; K02348 ElaA protein
SCNpilot_expt_500_p_scaffold_12_15
Herpetosiphon aurantiacus, Herpetosiphon, Herpetosiphonales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

14811..15119
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035F1DCA
hypothetical protein
YCII-related {ECO:0000313|EMBL:ABX05148.1}; TaxID=316274 species="Bacteria; Chloroflexi; Chloroflexia; Herpetosiphonales; Herpetosiphonaceae; Herpetosiphon.;" source="Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785).;"
SCNpilot_expt_500_p_scaffold_12_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15123..18557)
DNA (3435bp) protein (1145aa)
NodT family RND efflux system outer membrane lipoprotein (EC:2.4.1.12); K00694 cellulose synthase (UDP-forming) [EC:2.4.1.12] rbh
RND efflux system, outer membrane lipoprotein, NodT family {ECO:0000313|EMBL:ACS20880.1}; EC=2.4.1.12 {ECO:0000313|EMBL:ACS20880.1};; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
RND transporter n=1 Tax=Variovorax paradoxus RepID=UPI00037AEBC8 rbh
SCNpilot_expt_500_p_scaffold_12_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18545..19849)
DNA (1305bp) protein (435aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000362ADE8 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGU51501.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_p_scaffold_12_18
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19892..21172)
DNA (1281bp) protein (427aa)
multidrug transporter n=1 Tax=Variovorax paradoxus RepID=UPI000363E4F0 rbh
Multidrug resistance efflux pump {ECO:0000313|EMBL:EJL78130.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_12_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21328..21714)
DNA (387bp) protein (129aa)
type VI secretion protein n=1 Tax=Variovorax paradoxus RepID=UPI000371FDED
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGU49783.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_p_scaffold_12_20
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21748..22500)
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037D9C61 rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL80373.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_12_21
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22497..23633)
DNA (1137bp) protein (379aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003676535 rbh
Putative low-complexity protein {ECO:0000313|EMBL:EJL80374.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
pentapeptide repeats-containing protein rbh
SCNpilot_expt_500_p_scaffold_12_22
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23630..26269)
DNA (2640bp) protein (880aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035E667A rbh
Putative low-complexity protein {ECO:0000313|EMBL:EJL80375.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
pentapeptide repeats-containing protein rbh
SCNpilot_expt_500_p_scaffold_12_23
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26288..26722)
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037A61D8
Uncharacterized protein {ECO:0000313|EMBL:EJL80376.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_12_24
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26731..29073)
DNA (2343bp) protein (781aa)
type VI secretion protein Vgr n=1 Tax=Variovorax paradoxus RepID=UPI00035DBA47 rbh
Rhs element Vgr protein {ECO:0000313|EMBL:EJL80377.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
type VI secretion system vgr family protein rbh
SCNpilot_expt_500_p_scaffold_12_25
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29214..30350)
DNA (1137bp) protein (379aa)
4-hydroxybutyrate dehydrogenase n=1 Tax=Variovorax paradoxus RepID=UPI0003766D7C rbh
Alcohol dehydrogenase, class IV {ECO:0000313|EMBL:EJL80378.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
iron-containing alcohol dehydrogenase rbh
SCNpilot_expt_500_p_scaffold_12_26
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30485..31465
DNA (981bp) protein (327aa)
Alpha/beta hydrolase fold-3 domain protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V8X2_VARPE rbh
alpha/beta hydrolase folD-3 domain-containing protein rbh
Alpha/beta hydrolase fold-3 domain protein {ECO:0000313|EMBL:ADU37295.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_p_scaffold_12_27
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31462..32337
DNA (876bp) protein (292aa)
Acyl-CoA thioester hydrolase, YbgC/YbaW family n=1 Tax=Variovorax sp. CF313 RepID=J2KJL6_9BURK rbh
Acyl-CoA thioester hydrolase, YbgC/YbaW family {ECO:0000313|EMBL:EJL80380.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
GCN5-like N-acetyltransferaser rbh
SCNpilot_expt_500_p_scaffold_12_28
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32352..33248)
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CXP3_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL80381.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_12_29
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33394..34329)
DNA (936bp) protein (312aa)
folate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI0003634A17 rbh
Folate-binding protein YgfZ {ECO:0000313|EMBL:EJL80382.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
folate-binding protein YgfZ; K06980 rbh
SCNpilot_expt_500_p_scaffold_12_30
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34342..35469
DNA (1128bp) protein (376aa)
aminodeoxychorismate lyase n=1 Tax=Variovorax paradoxus RepID=UPI0003812F65 rbh
YceG family protein {ECO:0000313|EMBL:EJL80383.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
aminodeoxychorismate lyase; K07082 UPF0755 protein rbh
Displaying items 1-30 of 344 in total

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