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SCNpilot_expt_500_p_scaffold_39

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Displaying items 1-30 of 342 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_39_1
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

70..2322
DNA (2253bp) protein (751aa)
adenylate/guanylate cyclase with chase sensor; K01768 adenylate cyclase [EC:4.6.1.1] rbh
Putative transmembrane sensor domain protein n=1 Tax=Variovorax sp. CF313 RepID=J2TM91_9BURK rbh
Putative transmembrane sensor domain protein {ECO:0000313|EMBL:EJL79702.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_expt_500_p_scaffold_39_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2319..3155
DNA (837bp) protein (279aa)
Beta-lactamase domain protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UYT6_VARPE rbh
beta-lactamase domain-containing protein rbh
Beta-lactamase domain protein {ECO:0000313|EMBL:ADU40061.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_p_scaffold_39_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5346..5831
DNA (486bp) protein (162aa)
Type IV fimbrial biogenesis protein FimT n=3 Tax=Bacteria RepID=S2WX81_DELAC
Variovorax paradoxus strain MEDvA23 contig_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35802.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
Tfp pilus assembly protein FimT-like protein; K08084 type IV fimbrial biogenesis protein FimT
SCNpilot_expt_500_p_scaffold_39_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5924..6394
DNA (471bp) protein (157aa)
Type IV pilus modification protein PilV n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2XSR3_DELAC
Variovorax paradoxus strain MEDvA23 contig_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35987.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
type IV pilus modification protein PilV; K02671 type IV pilus assembly protein PilV
SCNpilot_expt_500_p_scaffold_39_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6399..7256
DNA (858bp) protein (286aa)
pilus assembly protein PilW n=1 Tax=Chryseobacterium taeanense RepID=UPI00036314D1 rbh
Variovorax paradoxus strain MEDvA23 contig_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35988.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
Tfp pilus assembly protein PilW-like protein; K02672 type IV pilus assembly protein PilW rbh
SCNpilot_expt_500_p_scaffold_39_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7253..7822
DNA (570bp) protein (190aa)
Type 4 fimbrial biogenesis protein PilX n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AU96_DELSC
Variovorax paradoxus strain MEDvA23 contig_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35803.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
type 4 fimbrial biogenesis protein PilX; K02673 type IV pilus assembly protein PilX
SCNpilot_expt_500_p_scaffold_39_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7838..12835
DNA (4998bp) protein (1666aa)
Type IV pilus assembly protein PilY1 n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2X3W1_DELAC rbh
Variovorax paradoxus strain MEDvA23 contig_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35989.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
fimbrial assembly protein; K02674 type IV pilus assembly protein PilY1 rbh
SCNpilot_expt_500_p_scaffold_39_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12874..13290
DNA (417bp) protein (139aa)
Tfp pilus assembly protein PilE-like protein n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BZC4_DELAS
Variovorax paradoxus strain MEDvA23 contig_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35990.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
Tfp pilus assembly protein PilE-like protein; K02655 type IV pilus assembly protein PilE
SCNpilot_expt_500_p_scaffold_39_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13309..13794)
DNA (486bp) protein (162aa)
molybdenum cofactor biosynthesis protein MoaC n=1 Tax=Variovorax paradoxus RepID=UPI00036EE38C
molybdenum cofactor biosynthesis protein c; K03637 molybdenum cofactor biosynthesis protein C
Cyclic pyranopterin monophosphate synthase accessory protein {ECO:0000256|HAMAP-Rule:MF_01224}; Molybdenum cofactor biosynthesis protein C {ECO:0000256|HAMAP-Rule:MF_01224}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_p_scaffold_39_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13848..15413
DNA (1566bp) protein (522aa)
peptidase M48 n=1 Tax=Variovorax paradoxus RepID=UPI000365FDB4 rbh
Variovorax paradoxus strain MEDvA23 contig_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35806.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
peptidase m48 ste24p rbh
SCNpilot_expt_500_p_scaffold_39_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15433..15786)
DNA (354bp) protein (118aa)
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI000369AEE9
Variovorax paradoxus strain MEDvA23 contig_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35807.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein; K08972 putative membrane protein
SCNpilot_expt_500_p_scaffold_39_12
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15881..16345)
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CWL0_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL79721.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_39_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16433..17179)
DNA (747bp) protein (249aa)
Integral membrane protein TerC n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UYS1_VARPE rbh
integral membrane protein terc rbh
Variovorax paradoxus strain MEDvA23 contig_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35809.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_expt_500_p_scaffold_39_14
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17608..18153
DNA (546bp) protein (182aa)
Putative Fe-S protein n=1 Tax=Variovorax sp. CF313 RepID=J2L3B6_9BURK rbh
Putative Fe-S protein {ECO:0000313|EMBL:EJL79723.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein; K06938 rbh
SCNpilot_expt_500_p_scaffold_39_15
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18156..18461
DNA (306bp) protein (102aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035CE7B7
Uncharacterized protein {ECO:0000313|EMBL:EJL79724.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_39_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18477..19037)
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2KHP7_9BURK rbh
yaeq family protein rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL79725.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_expt_500_p_scaffold_39_17
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19079..21250)
DNA (2172bp) protein (724aa)
TonB-dependent siderophore receptor n=1 Tax=Variovorax sp. CF313 RepID=J3CWL3_9BURK rbh
TonB-dependent siderophore receptor {ECO:0000313|EMBL:EJL79726.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
TonB-dependent siderophore receptor rbh
SCNpilot_expt_500_p_scaffold_39_18
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21267..22379)
DNA (1113bp) protein (371aa)
Putative iron-regulated membrane protein n=1 Tax=Variovorax sp. CF313 RepID=J2TMB3_9BURK rbh
Putative iron-regulated membrane protein {ECO:0000313|EMBL:EJL79727.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
PepSY-associated TM helix-containing protein rbh
SCNpilot_expt_500_p_scaffold_39_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22512..23891)
DNA (1380bp) protein (460aa)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
adenylosuccinate lyase; K01756 adenylosuccinate lyase [EC:4.3.2.2] rbh
Adenylosuccinate lyase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UYR5_VARPE rbh
SCNpilot_expt_500_p_scaffold_39_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24023..24634
DNA (612bp) protein (204aa)
glutathione S-transferase domain-containing protein; K00799 glutathione S-transferase [EC:2.5.1.18] rbh
Glutathione S-transferase domain protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CR92_VARPS rbh
Variovorax paradoxus strain MEDvA23 contig_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35816.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_expt_500_p_scaffold_39_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24752..25546)
DNA (795bp) protein (265aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UYR3_VARPE rbh
Variovorax paradoxus strain MEDvA23 contig_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35817.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
short-chain dehydrogenase/reductase sdr rbh
SCNpilot_expt_500_p_scaffold_39_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25543..26841)
DNA (1299bp) protein (433aa)
Major facilitator superfamily transporter n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UYR2_VARPE rbh
Variovorax paradoxus strain MEDvA23 contig_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35818.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
major facilitator superfamily transporter rbh
SCNpilot_expt_500_p_scaffold_39_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26860..28077)
DNA (1218bp) protein (406aa)
cyclopropane-fatty-acyL-phospholipid synthase (EC:2.1.1.79); K00574 cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] rbh
Cyclopropane-fatty-acyl-phospholipid synthase {ECO:0000313|EMBL:ADU40036.1}; EC=2.1.1.79 {ECO:0000313|EMBL:ADU40036.1};; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
Cyclopropane-fatty-acyl-phospholipid synthase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UYR1_VARPE rbh
SCNpilot_expt_500_p_scaffold_39_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28074..28871)
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UYR0_VARPE rbh
hypothetical protein; K09701 hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADU40035.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_p_scaffold_39_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28868..30202)
DNA (1335bp) protein (445aa)
Amine oxidase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UYQ9_VARPE rbh
amine oxidase rbh
Amine oxidase {ECO:0000313|EMBL:ADU40034.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_p_scaffold_39_26
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30496..31110)
DNA (615bp) protein (205aa)
peroxiredoxin (EC:1.11.1.15); K00432 glutathione peroxidase [EC:1.11.1.9] rbh
Glutathione peroxidase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UYQ8_VARPE rbh
Glutathione peroxidase {ECO:0000256|RuleBase:RU000499}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_p_scaffold_39_27
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31189..32097
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CWL6_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL79731.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_39_28
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32184..33074
DNA (891bp) protein (297aa)
RNA polymerase subunit sigma-24 n=1 Tax=Variovorax paradoxus RepID=UPI00035C2EDF rbh
RNA polymerase sigma-70 factor, TIGR02957 family {ECO:0000313|EMBL:EJL79732.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily rbh
SCNpilot_expt_500_p_scaffold_39_29
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33162..33623
DNA (462bp) protein (154aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
alkylhydroperoxidase n=1 Tax=Variovorax paradoxus RepID=UPI00037B4C3D
alkylhydroperoxidase like protein
SCNpilot_expt_500_p_scaffold_39_30
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33627..34811)
DNA (1185bp) protein (395aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003800AF1 rbh
Rare lipoprotein A {ECO:0000313|EMBL:EJL79734.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
rare lipoprotein a; K03642 rare lipoprotein A rbh
Displaying items 1-30 of 342 in total

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