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SCNpilot_expt_500_p_scaffold_105

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Displaying items 1-30 of 231 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_105_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..329
DNA (327bp) protein (109aa)
hypothetical protein, partial n=1 Tax=Variovorax paradoxus RepID=UPI0003822F70
methyl-accepting chemotaxis sensory transducer; K03406 methyl-accepting chemotaxis protein
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:ACS20799.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_500_p_scaffold_105_2
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

431..2161
DNA (1731bp) protein (577aa)
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI000374948E rbh
Methyl-accepting chemotaxis protein I (Serine chemoreceptor protein) {ECO:0000313|EMBL:CDS50377.1}; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
methyl-accepting chemotaxis sensory transducer; K03406 methyl-accepting chemotaxis protein
SCNpilot_expt_500_p_scaffold_105_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2257..4221
DNA (1965bp) protein (655aa)
flagellar hook protein FlgK n=1 Tax=Variovorax paradoxus RepID=UPI0003728620 rbh
flgK; flagellar hook-associated protein 1 FlgK rbh
Flagellar hook-associated protein 1 FlgK {ECO:0000313|EMBL:AGU51415.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_p_scaffold_105_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4257..5468
DNA (1212bp) protein (404aa)
flagellar hook-associated protein FlgL n=1 Tax=Variovorax paradoxus RepID=UPI000376BB96 rbh
flgL; flagellar hook-associated protein FlgL; K02397 flagellar hook-associated protein 3 FlgL rbh
Flagellar hook-associated protein 3 {ECO:0000313|EMBL:ACS20794.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_500_p_scaffold_105_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5552..6676
DNA (1125bp) protein (375aa)
aroG; phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive (EC:2.5.1.54) rbh
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR001361}; DAHP synthase {ECO:0000256|PIRNR:PIRNR001361}; Phospho-2-keto-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Variovorax paradoxus B4 RepID=T1XJJ7_VARPD rbh
SCNpilot_expt_500_p_scaffold_105_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6673..7470)
DNA (798bp) protein (266aa)
flagellar biosynthesis protein FliR n=1 Tax=Variovorax paradoxus RepID=UPI00036A1966 rbh
fliR; flagellar biosynthetic protein FliR rbh
Flagellar biosynthetic protein fliR {ECO:0000256|RuleBase:RU003842}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_p_scaffold_105_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7467..7736)
DNA (270bp) protein (90aa)
flagellar biosynthesis protein FliQ n=1 Tax=Variovorax paradoxus RepID=UPI000366ACD3
fliQ; flagellar biosynthetic protein FliQ
Flagellar biosynthetic protein FliQ {ECO:0000313|EMBL:AGU51412.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_p_scaffold_105_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7748..8506)
DNA (759bp) protein (253aa)
flagellar biosynthesis protein FliP n=1 Tax=Variovorax paradoxus RepID=UPI00035D3087 rbh
fliP; flagellar biosynthetic protein FliP rbh
Flagellar biosynthetic protein FliP {ECO:0000313|EMBL:AGU51411.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_p_scaffold_105_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8503..9006)
DNA (504bp) protein (168aa)
flagellar biosynthesis protein FliO n=1 Tax=Variovorax paradoxus RepID=UPI000382B248
fliO; putative flagellar biosynthetic protein FliO
Putative flagellar biosynthetic protein FliO {ECO:0000313|EMBL:AGU51410.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_p_scaffold_105_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9003..9473)
DNA (471bp) protein (157aa)
flagellar motor switch protein FliN n=1 Tax=Variovorax paradoxus RepID=UPI000365DBF8
flagellar motor switch protein FliN; K02417 flagellar motor switch protein FliN/FliY
Flagellar motor switch protein FliN {ECO:0000313|EMBL:ACS20789.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_500_p_scaffold_105_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9466..10470)
DNA (1005bp) protein (335aa)
flagellar motor switch protein FliM n=1 Tax=Variovorax paradoxus RepID=UPI00037793F2 rbh
fliM; flagellar motor switch protein FliM rbh
Flagellar motor switch protein FliM {ECO:0000313|EMBL:AGU51408.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_p_scaffold_105_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10498..11001)
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037F7465
fliL; putative flagellar basal body-associated protein FliL
Putative flagellar basal body-associated protein FliL {ECO:0000313|EMBL:AGU51407.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_p_scaffold_105_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11156..12595)
DNA (1440bp) protein (480aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000365E76D rbh
fliK2; putative flagellar hook-length control protein FliK
Putative flagellar hook-length control protein FliK {ECO:0000313|EMBL:AGU51406.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_p_scaffold_105_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12612..13067)
DNA (456bp) protein (152aa)
flagellar export protein FliJ n=1 Tax=Variovorax paradoxus RepID=UPI000377A1C1
fliJ; flagellar export protein FliJ
Flagellar export protein FliJ {ECO:0000313|EMBL:AGU51405.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_p_scaffold_105_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13064..14533)
DNA (1470bp) protein (490aa)
FliI/YscN family ATPase (EC:3.6.3.14); K02412 flagellum-specific ATP synthase [EC:3.6.3.14] rbh
ATPase, FliI/YscN family {ECO:0000313|EMBL:ACS20784.1}; EC=3.6.3.14 {ECO:0000313|EMBL:ACS20784.1};; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
ATP synthase n=1 Tax=Variovorax paradoxus RepID=UPI00035F81FE rbh
SCNpilot_expt_500_p_scaffold_105_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14539..15357)
DNA (819bp) protein (273aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000367DFCF rbh
fliH; putative flagellar assembly protein FliH
Putative flagellar assembly protein FliH {ECO:0000313|EMBL:AGU51403.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_p_scaffold_105_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15344..16342)
DNA (999bp) protein (333aa)
flagellar motor switch protein FliG n=1 Tax=Variovorax paradoxus RepID=UPI000361A943 rbh
flagellar motor switch protein FliG; K02410 flagellar motor switch protein FliG rbh
Flagellar motor switch protein FliG {ECO:0000313|EMBL:ACS20782.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_500_p_scaffold_105_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16335..18071)
DNA (1737bp) protein (579aa)
flagellar M-ring protein FliF n=1 Tax=Variovorax paradoxus RepID=UPI000360ACFA rbh
fliF; flagellar MS-ring protein; K02409 flagellar M-ring protein FliF rbh
Flagellar M-ring protein {ECO:0000256|PIRNR:PIRNR004862}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_500_p_scaffold_105_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18362..18682
DNA (321bp) protein (107aa)
flagellar hook-basal body protein FliE n=1 Tax=Variovorax paradoxus RepID=UPI00036B48AC
flagellar hook-basal body complex subunit FliE; K02408 flagellar hook-basal body complex protein FliE
Flagellar hook-basal body complex protein FliE {ECO:0000256|HAMAP-Rule:MF_00724, ECO:0000256|SAAS:SAAS00116622}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_500_p_scaffold_105_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18862..20517
DNA (1656bp) protein (552aa)
Flagellin n=4 Tax=Escherichia coli RepID=G4W6X3_ECOLX rbh
fliC; flagellin; K02406 flagellin rbh
Flagellin {ECO:0000313|EMBL:AEL33275.1}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
SCNpilot_expt_500_p_scaffold_105_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20691..21047
DNA (357bp) protein (119aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035FEC27
flaG; putative flagellar protein FlaG
Putative flagellar protein FlaG {ECO:0000313|EMBL:AGU51398.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_p_scaffold_105_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21114..22559
DNA (1446bp) protein (482aa)
flagellar hook protein n=1 Tax=Variovorax paradoxus RepID=UPI00037347F9 rbh
flagellar hook-associated 2 domain-containing protein; K02407 flagellar hook-associated protein 2 rbh
Flagellar hook-associated 2 domain protein {ECO:0000313|EMBL:ACS20778.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_500_p_scaffold_105_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22600..23019
DNA (420bp) protein (140aa)
flagellar biosynthesis protein FliS n=1 Tax=Variovorax paradoxus RepID=UPI0003810BA0
fliS; flagellar protein FliS
Flagellar protein FliS {ECO:0000313|EMBL:AGU51396.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_p_scaffold_105_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23033..23392
DNA (360bp) protein (120aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000378DB35
fliT; putative flagellar protein FliT
Putative flagellar protein FliT {ECO:0000313|EMBL:AGU51395.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_p_scaffold_105_25
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23422..24726
DNA (1305bp) protein (435aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003737C45 rbh
Uncharacterized protein {ECO:0000313|EMBL:CDS50295.1}; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
fliK1; flagellar hook-length control protein
SCNpilot_expt_500_p_scaffold_105_26
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24723..25022
DNA (300bp) protein (100aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003723368
flagellar biosynthesis protein; K04061 flagellar biosynthesis protein
Flagellar biosynthesis protein {ECO:0000313|EMBL:ACS20774.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_500_p_scaffold_105_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25329..25733
DNA (405bp) protein (135aa)
flagellar transcriptional regulator FlhD n=1 Tax=Variovorax paradoxus RepID=UPI00036A6CD1
flagellar transcriptional activator; K02403 flagellar transcriptional activator FlhD
Flagellar transcriptional regulator FlhD {ECO:0000256|HAMAP-Rule:MF_00725, ECO:0000256|SAAS:SAAS00011626}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_500_p_scaffold_105_28
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25730..26317
DNA (588bp) protein (196aa)
transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00037DDA98 rbh
transcriptional activator FlhC; K02402 flagellar transcriptional activator FlhC
Flagellar transcriptional regulator FlhC {ECO:0000255|HAMAP-Rule:MF_01891}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_500_p_scaffold_105_29
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26384..27244
DNA (861bp) protein (287aa)
flagellar motor protein MotA n=1 Tax=Variovorax paradoxus RepID=UPI00035F602A rbh
chemotaxis MotA protein; K02556 chemotaxis protein MotA rbh
Chemotaxis MotA protein {ECO:0000313|EMBL:ACS20771.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_500_p_scaffold_105_30
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27281..28246
DNA (966bp) protein (322aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003822AA9 rbh
OmpA/MotB domain-containing protein; K02557 chemotaxis protein MotB rbh
OmpA/MotB domain protein {ECO:0000313|EMBL:ACS20770.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
Displaying items 1-30 of 231 in total

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