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SCNpilot_expt_500_p_scaffold_147

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Displaying items 1-30 of 168 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_147_1
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1534)
DNA (1533bp) protein (511aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Variovorax sp. CF313 RepID=J3CCP6_9BURK rbh
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EJL68964.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
diguanylate cyclase/phosphodiesterase rbh
SCNpilot_expt_500_p_scaffold_147_2
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1719..3401
DNA (1683bp) protein (561aa)
S-layer protein n=1 Tax=Variovorax paradoxus RepID=UPI000361882D rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL68965.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_147_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3683..3895
DNA (213bp) protein (71aa)
Filamentous hemagglutinin family outer membrane protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V3Y7_VARPE
filamentous hemagglutinin family outer membrane protein; K15125 filamentous hemagglutinin
Filamentous hemagglutinin family outer membrane protein {ECO:0000313|EMBL:ADU38106.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_p_scaffold_147_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5579..6922
DNA (1344bp) protein (448aa)
Na+/H+ dicarboxylate symporter n=1 Tax=Variovorax sp. CF313 RepID=J2JIL4_9BURK rbh
Variovorax paradoxus strain MEDvA23 contig_12, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ34734.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
sodium:dicarboxylate symporter; K11103 aerobic C4-dicarboxylate transport protein rbh
SCNpilot_expt_500_p_scaffold_147_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6928..7632
DNA (705bp) protein (235aa)
Transcriptional regulator, GntR family n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UVD7_VARPE rbh
GntR family transcriptional regulator rbh
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ADU38731.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_p_scaffold_147_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7706..8824
DNA (1119bp) protein (373aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UVD8_VARPE rbh
Variovorax paradoxus strain MEDvA23 contig_12, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ34732.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_147_7
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8962..9399
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CAP2_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL67734.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_147_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9410..10909
DNA (1500bp) protein (500aa)
Putative carotenoid oxygenase n=1 Tax=Variovorax paradoxus B4 RepID=T1XF34_VARPD rbh
putative carotenoid oxygenase rbh
Putative carotenoid oxygenase {ECO:0000313|EMBL:AGU51168.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_p_scaffold_147_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10941..11843)
DNA (903bp) protein (301aa)
Transcriptional regulator, LysR family n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UW78_VARPE rbh
LysR family transcriptional regulator rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ADU38735.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_p_scaffold_147_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11957..13750
DNA (1794bp) protein (598aa)
gcl; glyoxylate carboligase Gcl (EC:4.1.1.47) rbh
Glyoxylate carboligase Gcl {ECO:0000313|EMBL:AGU51170.1}; EC=4.1.1.47 {ECO:0000313|EMBL:AGU51170.1};; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
Glyoxylate carboligase Gcl n=1 Tax=Variovorax paradoxus B4 RepID=T1XGC8_VARPD rbh
SCNpilot_expt_500_p_scaffold_147_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13764..14549
DNA (786bp) protein (262aa)
hydroxypyruvate isomerase (EC:5.3.1.22); K01816 hydroxypyruvate isomerase [EC:5.3.1.22] rbh
Hydroxypyruvate isomerase {ECO:0000256|PIRNR:PIRNR006241}; EC=5.3.1.22 {ECO:0000256|PIRNR:PIRNR006241};; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
Hydroxypyruvate isomerase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CVR6_VARPS rbh
SCNpilot_expt_500_p_scaffold_147_12
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14573..15481
DNA (909bp) protein (303aa)
2-hydroxy-3-oxopropionate reductase (EC:1.1.1.60); K00042 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60] rbh
2-hydroxy-3-oxopropionate reductase n=1 Tax=Variovorax sp. CF313 RepID=J3CAN8_9BURK rbh
2-hydroxy-3-oxopropionate reductase {ECO:0000313|EMBL:EJL67729.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_expt_500_p_scaffold_147_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15545..16882)
DNA (1338bp) protein (446aa)
FAD dependent oxidoreductase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UW82_VARPE rbh
fad dependent oxidoreductase rbh
FAD dependent oxidoreductase {ECO:0000313|EMBL:ADU38739.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_p_scaffold_147_14
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17552..17719)
DNA (168bp) protein (56aa)
Uncharacterized protein {ECO:0000313|EMBL:EWS64177.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
SCNpilot_expt_500_p_scaffold_147_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18046..19302
DNA (1257bp) protein (419aa)
Variovorax paradoxus strain MEDvA23 contig_12, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ34724.1}; EC=1.1.1.40 {ECO:0000313|EMBL:KIQ34724.1};; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
malic protein NAD-binding protein; K00029 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
Malic protein NAD-binding protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UW83_VARPE
SCNpilot_expt_500_p_scaffold_147_16
Pseudomonas sp. FH1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19371..20162)
DNA (792bp) protein (264aa)
hyuE; hydantoin racemase (EC:5.1.99.-)
hypothetical protein n=1 Tax=Pseudomonas veronii RepID=UPI00034C557C
Hydantoin racemase {ECO:0000313|EMBL:ETK14301.1}; TaxID=1284392 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. FH1.;"
SCNpilot_expt_500_p_scaffold_147_17
Paenibacillus terrae, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(20191..21252)
DNA (1062bp) protein (354aa)
hypothetical protein n=1 Tax=Streptomyces RepID=UPI00037120C9 rbh
OsrF; K09703 hypothetical protein rbh
OsrF {ECO:0000313|EMBL:AET59909.1}; TaxID=985665 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus terrae (strain HPL-003).;"
SCNpilot_expt_500_p_scaffold_147_18
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21304..22935)
DNA (1632bp) protein (544aa)
hypothetical protein n=1 Tax=Streptomyces RepID=UPI000364F905 rbh
Putative membrane protein {ECO:0000313|EMBL:EIM30770.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
peptide ABC transporter rbh
SCNpilot_expt_500_p_scaffold_147_19
Achromobacter insuavis, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22990..23865
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Streptomyces RepID=UPI00035FAD4F rbh
Transcriptional regulator, IclR family protein {ECO:0000313|EMBL:EGP42465.1}; TaxID=1003200 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter insuavis AXX-A.;"
IclR family transcriptional regulator
SCNpilot_expt_500_p_scaffold_147_20
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24008..25042
DNA (1035bp) protein (345aa)
taurine ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI0003750ABF rbh
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component {ECO:0000313|EMBL:EJL68783.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
nmt1/thi5 like domain-containing protein; K02051 NitT/TauT family transport system substrate-binding protein rbh
SCNpilot_expt_500_p_scaffold_147_21
Curvibacter putative symbiont of Hydra magnipapillata, Curvibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25042..25809
DNA (768bp) protein (256aa)
Uncharacterized ABC transporter ATP-binding protein MJ0412 n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YHD8_9BURK rbh
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein rbh
Uncharacterized ABC transporter ATP-binding protein MJ0412 {ECO:0000313|EMBL:CBA34007.1}; TaxID=667019 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Curvibacter.;" source="Curvibacter putative symbiont of Hydra magnipapillata.;"
SCNpilot_expt_500_p_scaffold_147_22
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25823..26593
DNA (771bp) protein (257aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component n=1 Tax=Variovorax sp. CF313 RepID=J3CHK0_9BURK rbh
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component {ECO:0000313|EMBL:EJL71774.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
binding-protein-dependent transport systems inner membrane component; K02050 NitT/TauT family transport system permease protein rbh
SCNpilot_expt_500_p_scaffold_147_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26644..26865)
DNA (222bp) protein (74aa)
Putative uncharacterized protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CVS4_VARPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS20577.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_500_p_scaffold_147_24
bacterium YEK0313, Bacteria

Not on your lists

26993..28141
DNA (1149bp) protein (383aa)
UPI0003D5AE0E related cluster n=1 Tax=unknown RepID=UPI0003D5AE0E
O-acetyltransferase OatA {ECO:0000313|EMBL:CEJ15184.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
Probable lipopolysaccharide modification acyltransferase
SCNpilot_expt_500_p_scaffold_147_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28077..29429)
DNA (1353bp) protein (451aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037100F9 rbh
integral membrane sensor signal transduction histidine kinase rbh
SCNpilot_expt_500_p_scaffold_147_26
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29426..30115)
DNA (690bp) protein (230aa)
transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00036D0566 rbh
Variovorax paradoxus strain MEDvA23 contig_12, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ34717.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
winged helix family two component transcriptional regulator rbh
SCNpilot_expt_500_p_scaffold_147_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30228..30917
DNA (690bp) protein (230aa)
PA-phosphatase n=1 Tax=Variovorax paradoxus RepID=UPI00036AF5C3 rbh
phosphoesterase pa-phosphatase-like protein rbh
Phosphoesterase PA-phosphatase related protein {ECO:0000313|EMBL:ADU38754.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_p_scaffold_147_28
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30928..31824)
DNA (897bp) protein (299aa)
aspartyl/asparaginyl beta-hydroxylase; K12979 beta-hydroxylase [EC:1.14.11.-] rbh
Aspartyl/Asparaginyl beta-hydroxylase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UW98_VARPE rbh
Aspartyl/Asparaginyl beta-hydroxylase {ECO:0000313|EMBL:ADU38755.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_p_scaffold_147_29
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31924..33351)
DNA (1428bp) protein (476aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
histidine kinase n=1 Tax=Variovorax paradoxus RepID=UPI0003690093 rbh
histidine kinase rbh
SCNpilot_expt_500_p_scaffold_147_30
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33348..34031)
DNA (684bp) protein (228aa)
transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00037A9028 rbh
Variovorax paradoxus strain MEDvA23 contig_12, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ34713.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
winged helix family two component transcriptional regulator rbh
Displaying items 1-30 of 168 in total

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