name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_500_p_scaffold_192_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2..151)
|
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
Superoxide dismutase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VB18_VARPE
|
|
SCNpilot_expt_500_p_scaffold_192_2
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(201..1499)
|
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
exodeoxyribonuclease vii, large subunit; K03601 exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
rbh
exodeoxyribonuclease VII n=1 Tax=Variovorax paradoxus RepID=UPI000378C0DC
rbh
|
|
SCNpilot_expt_500_p_scaffold_192_3
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
1828..2460
|
Biopolymer transport protein n=1 Tax=Variovorax sp. CF313 RepID=J2KBT5_9BURK
rbh
Biopolymer transport protein {ECO:0000313|EMBL:EJL70623.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
MotA/TolQ/ExbB proton channel; K03561 biopolymer transport protein ExbB
rbh
|
|
SCNpilot_expt_500_p_scaffold_192_4
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
2480..2905
|
Biopolymer transport protein n=1 Tax=Variovorax sp. CF313 RepID=J3CFI3_9BURK
Biopolymer transport protein {ECO:0000313|EMBL:EJL70624.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative biopolymer transport protein ExbD/TolR
|
|
SCNpilot_expt_500_p_scaffold_192_5
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
2906..3934
|
Tetraacyldisaccharide 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093884}; EC=2.7.1.130 {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093878};; Lipid A 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
tetraacyldisaccharide 4'-kinase (EC:2.7.1.130); K00912 tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
rbh
Tetraacyldisaccharide 4'-kinase n=1 Tax=Variovorax sp. CF313 RepID=J2JS27_9BURK
rbh
|
|
SCNpilot_expt_500_p_scaffold_192_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3915..4097
|
UPF0434 protein Vapar_2640 n=2 Tax=Variovorax RepID=Y2640_VARPS
hypothetical protein; K09791 hypothetical protein
UPF0434 protein RT97_07850 {ECO:0000256|HAMAP-Rule:MF_01187}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
|
|
SCNpilot_expt_500_p_scaffold_192_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
4094..4867
|
3-deoxy-D-manno-octulosonate cytidylyltransferase (EC:2.7.7.38); K00979 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
rbh
3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008}; EC=2.7.7.38 {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008};; CMP-2-keto-3-deoxyoctulosonic acid synthase {ECO:0000256|HAMAP-Rule:MF_00057}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Variovorax paradoxus RepID=UPI000366A498
rbh
|
|
SCNpilot_expt_500_p_scaffold_192_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
5005..5661
|
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" so
adenylate kinase n=1 Tax=Variovorax paradoxus RepID=UPI000368F913
rbh
|
|
SCNpilot_expt_500_p_scaffold_192_9
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5696..6658)
|
L-asparaginase/GlutRNAGln amidotransferase subunit D n=1 Tax=Variovorax sp. CF313 RepID=J3CFI6_9BURK
rbh
L-asparaginase/GlutRNAGln amidotransferase subunit D {ECO:0000313|EMBL:EJL70629.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
|
|
SCNpilot_expt_500_p_scaffold_192_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
6732..7415
|
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|RuleBase:RU003992}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|RuleBase:RU003992};; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
LexA repressor n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VB27_VARPE
rbh
|
|
SCNpilot_expt_500_p_scaffold_192_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
7553..7918
|
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CG00_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL70631.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
|
|
SCNpilot_expt_500_p_scaffold_192_12
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
8010..9017
|
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein; K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]
rbh
Phosphoglycerate dehydrogenase-like oxidoreductase n=1 Tax=Variovorax sp. CF313 RepID=J2SYC2_9BURK
rbh
Phosphoglycerate dehydrogenase-like oxidoreductase {ECO:0000313|EMBL:EJL70632.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
|
|
SCNpilot_expt_500_p_scaffold_192_13
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
9014..10171
|
Arabinose efflux permease family protein n=1 Tax=Variovorax sp. CF313 RepID=J2KBU5_9BURK
rbh
Arabinose efflux permease family protein {ECO:0000313|EMBL:EJL70633.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative transporter, MFS-type
rbh
|
|
SCNpilot_expt_500_p_scaffold_192_14
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
10303..11823
|
NAD-binding 3-hydroxyacyl-CoA dehydrogenase protein; K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
rbh
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Variovorax paradoxus RepID=UPI00036CFFD4
rbh
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:EJL70634.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
|
|
SCNpilot_expt_500_p_scaffold_192_15
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11835..12614
|
Enoyl-CoA hydratase/carnithine racemase n=1 Tax=Variovorax sp. CF313 RepID=J2JS36_9BURK
rbh
Enoyl-CoA hydratase/carnithine racemase {ECO:0000313|EMBL:EJL70635.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
enoyL-CoA hydratase/isomerase
rbh
|
|
SCNpilot_expt_500_p_scaffold_192_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
12676..13395
|
Crp/Fnr family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00037AC9C5
rbh
putative transcriptional regulator, Crp/Fnr family
rbh
Putative transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:AGU50017.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_expt_500_p_scaffold_192_17
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
13414..14523
|
aminoglycoside phosphotransferase n=1 Tax=Variovorax paradoxus RepID=UPI000361BA3E
rbh
Putative aminoglycoside phosphotransferase {ECO:0000313|EMBL:EJL70637.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
aminoglycoside phosphotransferase; K06979
rbh
|
|
SCNpilot_expt_500_p_scaffold_192_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14555..15826
|
Acyl-CoA dehydrogenase domain-containing protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VB35_VARPE
rbh
Acyl-CoA dehydrogenase domain-containing protein {ECO:0000313|EMBL:ADU37484.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_expt_500_p_scaffold_192_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(15907..16401)
|
GCN5-related N-acetyltransferase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VB36_VARPE
GCN5-like N-acetyltransferaser
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ADU37485.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_expt_500_p_scaffold_192_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(16398..17735)
|
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|SAAS:SAAS00078319}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|SAAS:SAAS00078300};; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
phosphoglucosamine mutase n=1 Tax=Variovorax paradoxus RepID=UPI000374A6FF
rbh
|
|
SCNpilot_expt_500_p_scaffold_192_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(17732..18550)
|
Dihydropteroate synthase {ECO:0000256|RuleBase:RU361205}; Short=DHPS {ECO:0000256|RuleBase:RU361205};; EC=2.5.1.15 {ECO:0000256|RuleBase:RU361205};; Dihydropteroate pyrophosphorylase {ECO:0000256|RuleBase:RU361205}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
dihydropteroate synthase n=1 Tax=Variovorax paradoxus RepID=UPI000372AA3F
rbh
|
|
SCNpilot_expt_500_p_scaffold_192_22
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(18660..20576)
|
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
ATP-dependent metalloprotease FtsH (EC:3.6.4.3); K03798 cell division protease FtsH [EC:3.4.24.-]
rbh
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Variovorax sp. CF313 RepID=J2SYC9_9BURK
rbh
|
|
SCNpilot_expt_500_p_scaffold_192_23
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(20744..21505)
|
Ribosomal RNA large subunit methyltransferase E {ECO:0000256|HAMAP-Rule:MF_01547}; EC=2.1.1.166 {ECO:0000256|HAMAP-Rule:MF_01547};; 23S rRNA Um2552 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; rRNA (uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
ribosomal RNA methyltransferase RrmJ/FtsJ; K02427 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
rbh
Ribosomal RNA large subunit methyltransferase E n=1 Tax=Variovorax sp. CF313 RepID=J2KBV5_9BURK
rbh
|
|
SCNpilot_expt_500_p_scaffold_192_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21521..21925
|
RNA-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI00036A4E4E
RNA-binding domain-containing protein
RNA-binding domain-containing protein {ECO:0000313|EMBL:AGU50025.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_expt_500_p_scaffold_192_25
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21931..22686
|
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2JS46_9BURK
rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL70645.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
rbh
|
|
SCNpilot_expt_500_p_scaffold_192_26
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(22732..23148)
|
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CG05_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL70646.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
|
|
SCNpilot_expt_500_p_scaffold_192_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(23159..23635)
|
Transcription elongation factor GreA n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VB44_VARPE
rbh
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
transcription elongation factor grea; K03624 transcription elongation factor GreA
rbh
|
|
SCNpilot_expt_500_p_scaffold_192_28
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(23702..24571)
|
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VB45_VARPE
rbh
Variovorax paradoxus strain MEDvA23 contig_15, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ34428.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
rbh
|
|
SCNpilot_expt_500_p_scaffold_192_29
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(24580..27732)
|
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
carB; carbamoyl-phosphate synthase, large chain CarB (EC:6.3.5.5)
rbh
Carbamoyl-phosphate synthase large chain n=1 Tax=Variovorax sp. CF313 RepID=J3CFJ7_9BURK
rbh
|
|
SCNpilot_expt_500_p_scaffold_192_30
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(27725..28924)
|
carbamoyL-phosphate synthase, small subunit; K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
rbh
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
Carbamoyl-phosphate synthase small chain n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VB47_VARPE
rbh
|