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SCNpilot_expt_500_p_scaffold_204

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Displaying items 1-30 of 90 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_204_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1147)
DNA (1146bp) protein (382aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000381C652
Variovorax paradoxus strain MEDvA23 contig_23, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33291.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_204_2
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1167..1655)
DNA (489bp) protein (163aa)
Tripartite tricarboxylate transporter TctB family n=1 Tax=Variovorax sp. CF313 RepID=J2SX20_9BURK rbh
hypothetical protein rbh
Tripartite tricarboxylate transporter TctB family {ECO:0000313|EMBL:EJL70182.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_expt_500_p_scaffold_204_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1801..3597)
DNA (1797bp) protein (599aa)
Putative type II/IV secretion system protein n=1 Tax=Variovorax paradoxus B4 RepID=T1X8D7_VARPD rbh
Putative type II/IV secretion system protein {ECO:0000313|EMBL:AGU48430.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
putative type II/IV secretion system protein rbh
SCNpilot_expt_500_p_scaffold_204_4
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3594..4379)
DNA (786bp) protein (262aa)
Spermidine synthase n=1 Tax=Variovorax sp. CF313 RepID=J3CES6_9BURK rbh
Spermidine synthase {ECO:0000313|EMBL:EJL70184.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_204_5
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4379..4912)
DNA (534bp) protein (178aa)
DNA glycosylase n=1 Tax=Variovorax paradoxus RepID=UPI00038163E5 rbh
G:T/U mismatch-specific DNA glycosylase {ECO:0000313|EMBL:EJL70185.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_204_6
R_Burkholderiales_63_240, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4952..5773)
DNA (822bp) protein (274aa)
Uncharacterized protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RWR1_9BURK
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_63_240_curated
SCNpilot_expt_500_p_scaffold_204_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5937..6362)
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037B9BEA
Variovorax paradoxus strain MEDvA23 contig_23, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33298.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_204_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6494..7354)
DNA (861bp) protein (287aa)
tatD-related deoxyribonuclease; K03424 TatD DNase family protein [EC:3.1.21.-] rbh
TatD-related deoxyribonuclease n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V0F2_VARPE rbh
TatD-related deoxyribonuclease {ECO:0000313|EMBL:ADU35556.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_p_scaffold_204_9
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7443..8462
DNA (1020bp) protein (340aa)
peptidase S1 and S6 chymotrypsin/Hap n=1 Tax=Variovorax paradoxus RepID=UPI000361465C rbh
Trypsin-like serine protease with C-terminal PDZ domain containing protein {ECO:0000313|EMBL:EJL70188.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
peptidase s1 and s6 chymotrypsin/hap rbh
SCNpilot_expt_500_p_scaffold_204_10
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8506..9519
DNA (1014bp) protein (338aa)
sigma 54 interacting domain-containing protein; K03924 MoxR-like ATPase [EC:3.6.3.-] rbh
MoxR-like ATPase n=1 Tax=Variovorax sp. CF313 RepID=J3CES9_9BURK rbh
MoxR-like ATPase {ECO:0000313|EMBL:EJL70189.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_expt_500_p_scaffold_204_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9500..10489
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2JQV5_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL70190.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_204_12
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10486..11523
DNA (1038bp) protein (346aa)
Mg-chelatase subunit ChlD n=1 Tax=Variovorax sp. CF313 RepID=J3CF67_9BURK rbh
Mg-chelatase subunit ChlD {ECO:0000313|EMBL:EJL70191.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
von willebrand factor type a; K07114 uncharacterized protein rbh
SCNpilot_expt_500_p_scaffold_204_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11520..12107)
DNA (588bp) protein (196aa)
Regulatory protein TetR n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V0E7_VARPE rbh
TetR family transcriptional regulator rbh
Regulatory protein TetR {ECO:0000313|EMBL:ADU35551.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_p_scaffold_204_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12189..13040
DNA (852bp) protein (284aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V0E6_VARPE rbh
short-chain dehydrogenase/reductase sdr; K07124 rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADU35550.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_p_scaffold_204_15
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13022..13696)
DNA (675bp) protein (225aa)
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2SX25_9BURK rbh
Transcriptional regulator {ECO:0000313|EMBL:EJL70192.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
TetR family transcriptional regulator rbh
SCNpilot_expt_500_p_scaffold_204_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13765..14367)
DNA (603bp) protein (201aa)
Isoleucine patch superfamily enzyme, carbonic anhydrase/acetyltransferase n=1 Tax=Variovorax sp. CF313 RepID=J2KAH3_9BURK rbh
Isoleucine patch superfamily enzyme, carbonic anhydrase/acetyltransferase {ECO:0000313|EMBL:EJL70193.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
phenylacetic acid degradation protein paay; K08279 carnitine operon protein CaiE rbh
SCNpilot_expt_500_p_scaffold_204_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14517..15320
DNA (804bp) protein (268aa)
enoyL-CoA hydratase/isomerase; K15866 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18] rbh
Enoyl-CoA hydratase/isomerase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V0E3_VARPE rbh
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:ADU35547.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_p_scaffold_204_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15324..15782
DNA (459bp) protein (153aa)
phenylacetic acid degradation protein PaaD; K02614 acyl-CoA thioesterase [EC:3.1.2.-]
Phenylacetic acid degradation protein PaaD n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CQR2_VARPS
Phenylacetic acid degradation protein PaaD {ECO:0000313|EMBL:ACS17888.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_500_p_scaffold_204_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15779..17089
DNA (1311bp) protein (437aa)
Phenylacetate-coenzyme A ligase {ECO:0000256|PIRNR:PIRNR006444}; EC=6.2.1.30 {ECO:0000256|PIRNR:PIRNR006444};; Phenylacetyl-CoA ligase {ECO:0000256|PIRNR:PIRNR006444}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
phenylacetate-CoA ligase; K01912 phenylacetate-CoA ligase [EC:6.2.1.30] rbh
Phenylacetate-CoA ligase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V0E1_VARPE rbh
SCNpilot_expt_500_p_scaffold_204_20
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17118..19562
DNA (2445bp) protein (815aa)
penicillin amidase (EC:3.5.1.11); K01434 penicillin amidase [EC:3.5.1.11] rbh
Penicilin amidase n=1 Tax=Herbaspirillum sp. CF444 RepID=J3DFH9_9BURK rbh
Penicilin amidase {ECO:0000313|EMBL:EJL90896.1}; Flags: Precursor;; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
SCNpilot_expt_500_p_scaffold_204_21
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19607..20617
DNA (1011bp) protein (337aa)
Phenylacetate-CoA oxygenase, PaaG subunit n=1 Tax=Variovorax sp. CF313 RepID=J2SX29_9BURK rbh
Phenylacetate-CoA oxygenase, PaaG subunit {ECO:0000313|EMBL:EJL70197.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
paaA; 1,2-phenylacetyl-CoA epoxidase, subunit A PaaA rbh
SCNpilot_expt_500_p_scaffold_204_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20614..20910
DNA (297bp) protein (99aa)
1,2-phenylacetyl-CoA epoxidase, subunit B PaaB n=1 Tax=Variovorax paradoxus B4 RepID=T1X8C2_VARPD
paaB; 1,2-phenylacetyl-CoA epoxidase, subunit B PaaB
1,2-phenylacetyl-CoA epoxidase, subunit B PaaB {ECO:0000313|EMBL:AGU48415.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_p_scaffold_204_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20925..21704
DNA (780bp) protein (260aa)
phenylacetate-CoA oxygenase subunit PaaI; K02611 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC [EC:1.14.13.149] rbh
phenylacetic acid degradation protein n=1 Tax=Variovorax paradoxus RepID=UPI000366D068 rbh
Phenylacetate-CoA oxygenase, PaaI subunit {ECO:0000313|EMBL:ACS17884.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_500_p_scaffold_204_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21701..22225
DNA (525bp) protein (175aa)
Phenylacetate-CoA oxygenase, PaaJ subunit n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V0D7_VARPE rbh
Variovorax paradoxus strain MEDvA23 contig_23, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33313.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
phenylacetate-CoA oxygenase subunit PaaJ; K02612 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD rbh
SCNpilot_expt_500_p_scaffold_204_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22241..23326
DNA (1086bp) protein (362aa)
Phenylacetate-CoA oxygenase/reductase, PaaK subunit n=1 Tax=Variovorax sp. CF313 RepID=J3CF70_9BURK rbh
Variovorax paradoxus strain MEDvA23 contig_23, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33314.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
phenylacetate-CoA oxygenase/reductase subunit PaaK; K02613 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE rbh
SCNpilot_expt_500_p_scaffold_204_26
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23374..24519
DNA (1146bp) protein (382aa)
branched-chain amino acid ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI00035F0FAD rbh
ABC transporter, branched-chain amino acid-binding protein rbh
ABC transporter, branched-chain amino acid-binding protein {ECO:0000313|EMBL:AGU48411.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_p_scaffold_204_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24716..25744
DNA (1029bp) protein (343aa)
ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI000370E284 rbh
Variovorax paradoxus strain MEDvA23 contig_23, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33316.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein rbh
SCNpilot_expt_500_p_scaffold_204_28
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25741..27654
DNA (1914bp) protein (638aa)
metal-dependent hydrolase n=1 Tax=Variovorax paradoxus RepID=UPI00035DA088 rbh
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein; K01998 branched-chain amino acid transport system permease protein rbh
ABC transporter related protein {ECO:0000313|EMBL:ADU35537.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_p_scaffold_204_29
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27651..28382
DNA (732bp) protein (244aa)
metal-dependent hydrolase n=1 Tax=Variovorax paradoxus RepID=UPI00036EEBCA rbh
ABC-type branched-chain amino acid transport system, ATPase component {ECO:0000313|EMBL:EJL70205.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein rbh
SCNpilot_expt_500_p_scaffold_204_30
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28527..30587
DNA (2061bp) protein (687aa)
phenylacetic acid degradation protein paan; K02618 oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase [EC:3.7.1.16 1.17.1.7] rbh
enoyl-CoA hydratase n=1 Tax=Variovorax paradoxus RepID=UPI00037CCEBC rbh
Phenylacetic acid degradation protein paaN {ECO:0000313|EMBL:EJL70206.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
Displaying items 1-30 of 90 in total

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