name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_500_p_scaffold_204_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2..1147)
|
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000381C652
Variovorax paradoxus strain MEDvA23 contig_23, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33291.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
|
|
SCNpilot_expt_500_p_scaffold_204_2
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1167..1655)
|
Tripartite tricarboxylate transporter TctB family n=1 Tax=Variovorax sp. CF313 RepID=J2SX20_9BURK
rbh
hypothetical protein
rbh
Tripartite tricarboxylate transporter TctB family {ECO:0000313|EMBL:EJL70182.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
|
|
SCNpilot_expt_500_p_scaffold_204_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1801..3597)
|
Putative type II/IV secretion system protein n=1 Tax=Variovorax paradoxus B4 RepID=T1X8D7_VARPD
rbh
Putative type II/IV secretion system protein {ECO:0000313|EMBL:AGU48430.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
putative type II/IV secretion system protein
rbh
|
|
SCNpilot_expt_500_p_scaffold_204_4
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3594..4379)
|
Spermidine synthase n=1 Tax=Variovorax sp. CF313 RepID=J3CES6_9BURK
rbh
Spermidine synthase {ECO:0000313|EMBL:EJL70184.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
rbh
|
|
SCNpilot_expt_500_p_scaffold_204_5
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4379..4912)
|
DNA glycosylase n=1 Tax=Variovorax paradoxus RepID=UPI00038163E5
rbh
G:T/U mismatch-specific DNA glycosylase {ECO:0000313|EMBL:EJL70185.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
rbh
|
|
SCNpilot_expt_500_p_scaffold_204_6
R_Burkholderiales_63_240, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4952..5773)
|
Uncharacterized protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RWR1_9BURK
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_63_240_curated
|
|
SCNpilot_expt_500_p_scaffold_204_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5937..6362)
|
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037B9BEA
Variovorax paradoxus strain MEDvA23 contig_23, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33298.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
|
|
SCNpilot_expt_500_p_scaffold_204_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6494..7354)
|
TatD-related deoxyribonuclease n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V0F2_VARPE
rbh
TatD-related deoxyribonuclease {ECO:0000313|EMBL:ADU35556.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_expt_500_p_scaffold_204_9
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
7443..8462
|
peptidase S1 and S6 chymotrypsin/Hap n=1 Tax=Variovorax paradoxus RepID=UPI000361465C
rbh
Trypsin-like serine protease with C-terminal PDZ domain containing protein {ECO:0000313|EMBL:EJL70188.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
peptidase s1 and s6 chymotrypsin/hap
rbh
|
|
SCNpilot_expt_500_p_scaffold_204_10
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
8506..9519
|
MoxR-like ATPase n=1 Tax=Variovorax sp. CF313 RepID=J3CES9_9BURK
rbh
MoxR-like ATPase {ECO:0000313|EMBL:EJL70189.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
|
|
SCNpilot_expt_500_p_scaffold_204_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
9500..10489
|
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2JQV5_9BURK
rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL70190.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
rbh
|
|
SCNpilot_expt_500_p_scaffold_204_12
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
10486..11523
|
Mg-chelatase subunit ChlD n=1 Tax=Variovorax sp. CF313 RepID=J3CF67_9BURK
rbh
Mg-chelatase subunit ChlD {ECO:0000313|EMBL:EJL70191.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
von willebrand factor type a; K07114 uncharacterized protein
rbh
|
|
SCNpilot_expt_500_p_scaffold_204_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(11520..12107)
|
Regulatory protein TetR n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V0E7_VARPE
rbh
TetR family transcriptional regulator
rbh
Regulatory protein TetR {ECO:0000313|EMBL:ADU35551.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_expt_500_p_scaffold_204_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
12189..13040
|
Short-chain dehydrogenase/reductase SDR n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V0E6_VARPE
rbh
short-chain dehydrogenase/reductase sdr; K07124
rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADU35550.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_expt_500_p_scaffold_204_15
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13022..13696)
|
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2SX25_9BURK
rbh
Transcriptional regulator {ECO:0000313|EMBL:EJL70192.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
TetR family transcriptional regulator
rbh
|
|
SCNpilot_expt_500_p_scaffold_204_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13765..14367)
|
Isoleucine patch superfamily enzyme, carbonic anhydrase/acetyltransferase n=1 Tax=Variovorax sp. CF313 RepID=J2KAH3_9BURK
rbh
Isoleucine patch superfamily enzyme, carbonic anhydrase/acetyltransferase {ECO:0000313|EMBL:EJL70193.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
phenylacetic acid degradation protein paay; K08279 carnitine operon protein CaiE
rbh
|
|
SCNpilot_expt_500_p_scaffold_204_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14517..15320
|
enoyL-CoA hydratase/isomerase; K15866 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]
rbh
Enoyl-CoA hydratase/isomerase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V0E3_VARPE
rbh
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:ADU35547.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_expt_500_p_scaffold_204_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15324..15782
|
phenylacetic acid degradation protein PaaD; K02614 acyl-CoA thioesterase [EC:3.1.2.-]
Phenylacetic acid degradation protein PaaD n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CQR2_VARPS
Phenylacetic acid degradation protein PaaD {ECO:0000313|EMBL:ACS17888.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
|
|
SCNpilot_expt_500_p_scaffold_204_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15779..17089
|
Phenylacetate-coenzyme A ligase {ECO:0000256|PIRNR:PIRNR006444}; EC=6.2.1.30 {ECO:0000256|PIRNR:PIRNR006444};; Phenylacetyl-CoA ligase {ECO:0000256|PIRNR:PIRNR006444}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
Phenylacetate-CoA ligase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V0E1_VARPE
rbh
|
|
SCNpilot_expt_500_p_scaffold_204_20
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17118..19562
|
Penicilin amidase n=1 Tax=Herbaspirillum sp. CF444 RepID=J3DFH9_9BURK
rbh
Penicilin amidase {ECO:0000313|EMBL:EJL90896.1}; Flags: Precursor;; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
|
|
SCNpilot_expt_500_p_scaffold_204_21
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
19607..20617
|
Phenylacetate-CoA oxygenase, PaaG subunit n=1 Tax=Variovorax sp. CF313 RepID=J2SX29_9BURK
rbh
Phenylacetate-CoA oxygenase, PaaG subunit {ECO:0000313|EMBL:EJL70197.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
paaA; 1,2-phenylacetyl-CoA epoxidase, subunit A PaaA
rbh
|
|
SCNpilot_expt_500_p_scaffold_204_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
20614..20910
|
1,2-phenylacetyl-CoA epoxidase, subunit B PaaB n=1 Tax=Variovorax paradoxus B4 RepID=T1X8C2_VARPD
paaB; 1,2-phenylacetyl-CoA epoxidase, subunit B PaaB
1,2-phenylacetyl-CoA epoxidase, subunit B PaaB {ECO:0000313|EMBL:AGU48415.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_expt_500_p_scaffold_204_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
20925..21704
|
phenylacetate-CoA oxygenase subunit PaaI; K02611 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC [EC:1.14.13.149]
rbh
phenylacetic acid degradation protein n=1 Tax=Variovorax paradoxus RepID=UPI000366D068
rbh
Phenylacetate-CoA oxygenase, PaaI subunit {ECO:0000313|EMBL:ACS17884.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
|
|
SCNpilot_expt_500_p_scaffold_204_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21701..22225
|
Phenylacetate-CoA oxygenase, PaaJ subunit n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V0D7_VARPE
rbh
Variovorax paradoxus strain MEDvA23 contig_23, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33313.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
phenylacetate-CoA oxygenase subunit PaaJ; K02612 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD
rbh
|
|
SCNpilot_expt_500_p_scaffold_204_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
22241..23326
|
Phenylacetate-CoA oxygenase/reductase, PaaK subunit n=1 Tax=Variovorax sp. CF313 RepID=J3CF70_9BURK
rbh
Variovorax paradoxus strain MEDvA23 contig_23, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33314.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
phenylacetate-CoA oxygenase/reductase subunit PaaK; K02613 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE
rbh
|
|
SCNpilot_expt_500_p_scaffold_204_26
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
23374..24519
|
branched-chain amino acid ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI00035F0FAD
rbh
ABC transporter, branched-chain amino acid-binding protein
rbh
ABC transporter, branched-chain amino acid-binding protein {ECO:0000313|EMBL:AGU48411.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_expt_500_p_scaffold_204_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
24716..25744
|
ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI000370E284
rbh
Variovorax paradoxus strain MEDvA23 contig_23, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33316.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
rbh
|
|
SCNpilot_expt_500_p_scaffold_204_28
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
25741..27654
|
metal-dependent hydrolase n=1 Tax=Variovorax paradoxus RepID=UPI00035DA088
rbh
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein; K01998 branched-chain amino acid transport system permease protein
rbh
ABC transporter related protein {ECO:0000313|EMBL:ADU35537.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_expt_500_p_scaffold_204_29
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
27651..28382
|
metal-dependent hydrolase n=1 Tax=Variovorax paradoxus RepID=UPI00036EEBCA
rbh
ABC-type branched-chain amino acid transport system, ATPase component {ECO:0000313|EMBL:EJL70205.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein
rbh
|
|
SCNpilot_expt_500_p_scaffold_204_30
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
28527..30587
|
phenylacetic acid degradation protein paan; K02618 oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase [EC:3.7.1.16 1.17.1.7]
rbh
enoyl-CoA hydratase n=1 Tax=Variovorax paradoxus RepID=UPI00037CCEBC
rbh
Phenylacetic acid degradation protein paaN {ECO:0000313|EMBL:EJL70206.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
|