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SCNpilot_expt_500_p_scaffold_222

Search features with annotation key words

Displaying items 1-30 of 85 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_222_1
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(161..2032)
DNA (1872bp) protein (624aa)
Phosphoenolpyruvate carboxykinase [GTP] {ECO:0000256|HAMAP-Rule:MF_00452}; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00452};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00452};; EC=4.1.1.32 {ECO:0000256|HAMAP-Rule:MF_00452};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
pckG; phosphoenolpyruvate carboxykinase PckG (EC:4.1.1.32) rbh
phosphoenolpyruvate carboxykinase n=1 Tax=Variovorax paradoxus RepID=UPI0003650A1A rbh
SCNpilot_expt_500_p_scaffold_222_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2186..2338)
DNA (153bp) protein (51aa)
Uncharacterized protein n=2 Tax=Variovorax paradoxus RepID=T1X4E7_VARPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS16811.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_500_p_scaffold_222_3
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2451..3659)
DNA (1209bp) protein (403aa)
threonine dehydratase; K01754 threonine dehydratase [EC:4.3.1.19] rbh
Threonine dehydratase, medium form n=1 Tax=Variovorax sp. CF313 RepID=J2KUM7_9BURK rbh
Threonine dehydratase, medium form {ECO:0000313|EMBL:EJL76713.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_expt_500_p_scaffold_222_4
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3766..6090
DNA (2325bp) protein (775aa)
AAA+ family ATPase n=1 Tax=Variovorax sp. CF313 RepID=J2TEI0_9BURK rbh
AAA+ family ATPase {ECO:0000313|EMBL:EJL76712.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
aaa ATPase central domain-containing protein rbh
SCNpilot_expt_500_p_scaffold_222_5
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6209..7819
DNA (1611bp) protein (537aa)
Periplasmic protease n=1 Tax=Variovorax sp. CF313 RepID=J3CRE4_9BURK rbh
Periplasmic protease {ECO:0000313|EMBL:EJL76711.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
peptidase s41 rbh
SCNpilot_expt_500_p_scaffold_222_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7979..9160
DNA (1182bp) protein (394aa)
Inosine-uridine nucleoside N-ribohydrolase n=1 Tax=Variovorax sp. CF313 RepID=J2K8Y2_9BURK rbh
Inosine-uridine nucleoside N-ribohydrolase {ECO:0000313|EMBL:EJL76710.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
inosine/uridine-preferring nucleoside hydrolase rbh
SCNpilot_expt_500_p_scaffold_222_7
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9288..10127
DNA (840bp) protein (280aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000380CFC0 rbh
putative 2-pyrone-4,6-dicarboxylic acid hydrolase rbh
Putative 2-pyrone-4,6-dicarboxylic acid hydrolase {ECO:0000313|EMBL:CCH09710.1}; TaxID=1167634 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans NH44784-1996.;"
SCNpilot_expt_500_p_scaffold_222_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10124..11116
DNA (993bp) protein (331aa)
ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI000379C0E9 rbh
putative Bug-like extra-cytoplasmic solute receptor, TTT family rbh
Putative Bug-like extra-cytoplasmic solute receptor, TTT family {ECO:0000313|EMBL:AGU53320.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_p_scaffold_222_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11133..11999)
DNA (867bp) protein (289aa)
LysR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI000379C7D5 rbh
transcriptional regulator, LysR family rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AGU53322.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_p_scaffold_222_10
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12037..13932)
DNA (1896bp) protein (632aa)
ATP-dependent DNA helicase recq; K03654 ATP-dependent DNA helicase RecQ [EC:3.6.4.12] rbh
ATP-dependent DNA helicase RecQ n=1 Tax=Variovorax sp. CF313 RepID=J3CQX4_9BURK rbh
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:EJL76709.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_expt_500_p_scaffold_222_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14224..15195
DNA (972bp) protein (324aa)
ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI00036AAE5B rbh
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component {ECO:0000313|EMBL:EJL76708.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative ABC transporter, substrate-binding protein rbh
SCNpilot_expt_500_p_scaffold_222_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15209..16051
DNA (843bp) protein (281aa)
ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI0003636B5D rbh
Variovorax paradoxus strain MEDvA23 contig_4, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ37015.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
binding-protein-dependent transport systems inner membrane component; K02050 NitT/TauT family transport system permease protein rbh
SCNpilot_expt_500_p_scaffold_222_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16036..16830
DNA (795bp) protein (265aa)
ABC transporter related protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V089_VARPE rbh
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein rbh
Variovorax paradoxus strain MEDvA23 contig_4, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ37014.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_expt_500_p_scaffold_222_14
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16842..17579
DNA (738bp) protein (246aa)
Histidine utilization repressor n=1 Tax=Variovorax sp. CF313 RepID=J2K8Y0_9BURK rbh
Histidine utilization repressor {ECO:0000313|EMBL:EJL76705.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
GntR family transcriptional regulator; K05836 GntR family transcriptional regulator, histidine utilization repressor rbh
SCNpilot_expt_500_p_scaffold_222_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17641..19200
DNA (1560bp) protein (520aa)
histidine ammonia-lyase (EC:4.3.1.3); K01745 histidine ammonia-lyase [EC:4.3.1.3] rbh
Histidine ammonia-lyase {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|RuleBase:RU004479}; Short=Histidase {ECO:0000256|HAMAP-Rule:MF_00229};; EC=4.3.1.3 {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|RuleBase:RU004479};; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
Histidine ammonia-lyase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V091_VARPE rbh
SCNpilot_expt_500_p_scaffold_222_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19231..19914
DNA (684bp) protein (228aa)
Urocanate hydratase {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632}; Short=Urocanase {ECO:0000256|HAMAP-Rule:MF_00577};; EC=4.2.1.49 {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632};; Imidazolonepropionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00577}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
urocanate hydratase (EC:4.2.1.49); K01712 urocanate hydratase [EC:4.2.1.49]
Urocanate hydratase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V092_VARPE
SCNpilot_expt_500_p_scaffold_222_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19926..20822
DNA (897bp) protein (299aa)
Urocanate hydratase {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632}; Short=Urocanase {ECO:0000256|HAMAP-Rule:MF_00577};; EC=4.2.1.49 {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632};; Imidazolonepropionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00577}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hutU; urocanate hydratase HutU (EC:4.2.1.49)
Urocanate hydratase n=1 Tax=Variovorax paradoxus B4 RepID=T1X336_VARPD
SCNpilot_expt_500_p_scaffold_222_18
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20822..21667
DNA (846bp) protein (282aa)
Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin n=1 Tax=Variovorax sp. CF313 RepID=J3CRD8_9BURK rbh
Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin {ECO:0000313|EMBL:EJL76701.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
phytanoyl-CoA dioxygenase rbh
SCNpilot_expt_500_p_scaffold_222_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21721..22527
DNA (807bp) protein (269aa)
IclR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00036A0E40 rbh
IclR family transcriptional regulator rbh
Transcriptional regulator, IclR family {ECO:0000313|EMBL:ADU34407.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_p_scaffold_222_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22577..23329
DNA (753bp) protein (251aa)
ABC transporter, substrate-binding protein n=1 Tax=Variovorax paradoxus B4 RepID=T1X340_VARPD rbh
ABC transporter, substrate-binding protein rbh
ABC transporter, substrate-binding protein {ECO:0000313|EMBL:AGU47327.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_p_scaffold_222_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23337..24005
DNA (669bp) protein (223aa)
ABC transporter, permease protein n=1 Tax=Variovorax paradoxus B4 RepID=T1X3Z2_VARPD rbh
Variovorax paradoxus strain MEDvA23 contig_4, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ37008.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
ABC transporter, permease protein rbh
SCNpilot_expt_500_p_scaffold_222_22
unknown

Not on your lists

24002..24157
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_222_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24154..24726
DNA (573bp) protein (191aa)
HutD n=1 Tax=Variovorax paradoxus RepID=UPI0003606460 rbh
Variovorax paradoxus strain MEDvA23 contig_4, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ37007.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein; K09975 hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_222_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24754..25980
DNA (1227bp) protein (409aa)
Imidazolonepropionase {ECO:0000256|HAMAP-Rule:MF_00372, ECO:0000256|SAAS:SAAS00083112}; EC=3.5.2.7 {ECO:0000256|HAMAP-Rule:MF_00372, ECO:0000256|SAAS:SAAS00083112};; Imidazolone-5-propionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00372}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
imidazolonepropionase (EC:3.5.2.7); K01468 imidazolonepropionase [EC:3.5.2.7] rbh
imidazolonepropionase n=1 Tax=Variovorax paradoxus RepID=UPI00037C4481 rbh
SCNpilot_expt_500_p_scaffold_222_25
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25977..27359
DNA (1383bp) protein (461aa)
formiminoglutamate deiminase (EC:3.5.4.28); K05603 formimidoylglutamate deiminase [EC:3.5.3.13] rbh
N-formimino-L-glutamate deiminase n=1 Tax=Variovorax paradoxus RepID=UPI00036B8F25 rbh
Formiminoglutamate deiminase {ECO:0000313|EMBL:EJL76695.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_expt_500_p_scaffold_222_26
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27371..28195
DNA (825bp) protein (275aa)
N-formylglutamate amidohydrolase; K01458 N-formylglutamate deformylase [EC:3.5.1.68] rbh
N-formylglutamate amidohydrolase n=1 Tax=Variovorax paradoxus RepID=UPI00035F9927 rbh
N-formylglutamate amidohydrolase {ECO:0000313|EMBL:EJL76694.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_expt_500_p_scaffold_222_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28236..29288
DNA (1053bp) protein (351aa)
homocysteine S-methyltransferase; K00548 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] rbh
5-methyltetrahydrofolate--homocysteine methyltransferase n=1 Tax=Variovorax paradoxus RepID=UPI00037DC566 rbh
Variovorax paradoxus strain MEDvA23 contig_4, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ37003.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_expt_500_p_scaffold_222_28
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29456..30121
DNA (666bp) protein (222aa)
ligand-binding protein SH3 n=1 Tax=Variovorax paradoxus RepID=UPI00035F171B rbh
SH3 type 3 domain protein {ECO:0000313|EMBL:EJL76691.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SH3 type 3 domain-containing protein rbh
SCNpilot_expt_500_p_scaffold_222_29
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30128..31054)
DNA (927bp) protein (309aa)
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2K8W8_9BURK rbh
Transcriptional regulator {ECO:0000313|EMBL:EJL76690.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
LysR family transcriptional regulator rbh
SCNpilot_expt_500_p_scaffold_222_30
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31180..31617
DNA (438bp) protein (146aa)
Putative membrane protein n=1 Tax=Variovorax sp. CF313 RepID=J3CQW3_9BURK
Putative membrane protein {ECO:0000313|EMBL:EJL76689.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
transmembrane pair domain-containing protein
Displaying items 1-30 of 85 in total

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