name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_500_p_scaffold_222_1
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(161..2032)
|
Phosphoenolpyruvate carboxykinase [GTP] {ECO:0000256|HAMAP-Rule:MF_00452}; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00452};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00452};; EC=4.1.1.32 {ECO:0000256|HAMAP-Rule:MF_00452};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
pckG; phosphoenolpyruvate carboxykinase PckG (EC:4.1.1.32)
rbh
phosphoenolpyruvate carboxykinase n=1 Tax=Variovorax paradoxus RepID=UPI0003650A1A
rbh
|
|
SCNpilot_expt_500_p_scaffold_222_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2186..2338)
|
Uncharacterized protein n=2 Tax=Variovorax paradoxus RepID=T1X4E7_VARPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS16811.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
|
|
SCNpilot_expt_500_p_scaffold_222_3
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2451..3659)
|
Threonine dehydratase, medium form n=1 Tax=Variovorax sp. CF313 RepID=J2KUM7_9BURK
rbh
Threonine dehydratase, medium form {ECO:0000313|EMBL:EJL76713.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
|
|
SCNpilot_expt_500_p_scaffold_222_4
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3766..6090
|
AAA+ family ATPase n=1 Tax=Variovorax sp. CF313 RepID=J2TEI0_9BURK
rbh
AAA+ family ATPase {ECO:0000313|EMBL:EJL76712.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
aaa ATPase central domain-containing protein
rbh
|
|
SCNpilot_expt_500_p_scaffold_222_5
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
6209..7819
|
Periplasmic protease n=1 Tax=Variovorax sp. CF313 RepID=J3CRE4_9BURK
rbh
Periplasmic protease {ECO:0000313|EMBL:EJL76711.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
peptidase s41
rbh
|
|
SCNpilot_expt_500_p_scaffold_222_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
7979..9160
|
Inosine-uridine nucleoside N-ribohydrolase n=1 Tax=Variovorax sp. CF313 RepID=J2K8Y2_9BURK
rbh
Inosine-uridine nucleoside N-ribohydrolase {ECO:0000313|EMBL:EJL76710.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
inosine/uridine-preferring nucleoside hydrolase
rbh
|
|
SCNpilot_expt_500_p_scaffold_222_7
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
9288..10127
|
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000380CFC0
rbh
putative 2-pyrone-4,6-dicarboxylic acid hydrolase
rbh
Putative 2-pyrone-4,6-dicarboxylic acid hydrolase {ECO:0000313|EMBL:CCH09710.1}; TaxID=1167634 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans NH44784-1996.;"
|
|
SCNpilot_expt_500_p_scaffold_222_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
10124..11116
|
ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI000379C0E9
rbh
putative Bug-like extra-cytoplasmic solute receptor, TTT family
rbh
Putative Bug-like extra-cytoplasmic solute receptor, TTT family {ECO:0000313|EMBL:AGU53320.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_expt_500_p_scaffold_222_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(11133..11999)
|
LysR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI000379C7D5
rbh
transcriptional regulator, LysR family
rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AGU53322.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_expt_500_p_scaffold_222_10
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12037..13932)
|
ATP-dependent DNA helicase RecQ n=1 Tax=Variovorax sp. CF313 RepID=J3CQX4_9BURK
rbh
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:EJL76709.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
|
|
SCNpilot_expt_500_p_scaffold_222_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14224..15195
|
ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI00036AAE5B
rbh
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component {ECO:0000313|EMBL:EJL76708.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative ABC transporter, substrate-binding protein
rbh
|
|
SCNpilot_expt_500_p_scaffold_222_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15209..16051
|
ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI0003636B5D
rbh
Variovorax paradoxus strain MEDvA23 contig_4, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ37015.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
binding-protein-dependent transport systems inner membrane component; K02050 NitT/TauT family transport system permease protein
rbh
|
|
SCNpilot_expt_500_p_scaffold_222_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
16036..16830
|
ABC transporter related protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V089_VARPE
rbh
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein
rbh
Variovorax paradoxus strain MEDvA23 contig_4, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ37014.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
|
|
SCNpilot_expt_500_p_scaffold_222_14
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
16842..17579
|
Histidine utilization repressor n=1 Tax=Variovorax sp. CF313 RepID=J2K8Y0_9BURK
rbh
Histidine utilization repressor {ECO:0000313|EMBL:EJL76705.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
GntR family transcriptional regulator; K05836 GntR family transcriptional regulator, histidine utilization repressor
rbh
|
|
SCNpilot_expt_500_p_scaffold_222_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17641..19200
|
Histidine ammonia-lyase {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|RuleBase:RU004479}; Short=Histidase {ECO:0000256|HAMAP-Rule:MF_00229};; EC=4.3.1.3 {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|RuleBase:RU004479};; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
Histidine ammonia-lyase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V091_VARPE
rbh
|
|
SCNpilot_expt_500_p_scaffold_222_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
19231..19914
|
Urocanate hydratase {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632}; Short=Urocanase {ECO:0000256|HAMAP-Rule:MF_00577};; EC=4.2.1.49 {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632};; Imidazolonepropionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00577}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
Urocanate hydratase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V092_VARPE
|
|
SCNpilot_expt_500_p_scaffold_222_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
19926..20822
|
Urocanate hydratase {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632}; Short=Urocanase {ECO:0000256|HAMAP-Rule:MF_00577};; EC=4.2.1.49 {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632};; Imidazolonepropionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00577}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hutU; urocanate hydratase HutU (EC:4.2.1.49)
Urocanate hydratase n=1 Tax=Variovorax paradoxus B4 RepID=T1X336_VARPD
|
|
SCNpilot_expt_500_p_scaffold_222_18
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
20822..21667
|
Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin n=1 Tax=Variovorax sp. CF313 RepID=J3CRD8_9BURK
rbh
Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin {ECO:0000313|EMBL:EJL76701.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
phytanoyl-CoA dioxygenase
rbh
|
|
SCNpilot_expt_500_p_scaffold_222_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21721..22527
|
IclR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00036A0E40
rbh
IclR family transcriptional regulator
rbh
Transcriptional regulator, IclR family {ECO:0000313|EMBL:ADU34407.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_expt_500_p_scaffold_222_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
22577..23329
|
ABC transporter, substrate-binding protein n=1 Tax=Variovorax paradoxus B4 RepID=T1X340_VARPD
rbh
ABC transporter, substrate-binding protein
rbh
ABC transporter, substrate-binding protein {ECO:0000313|EMBL:AGU47327.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_expt_500_p_scaffold_222_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
23337..24005
|
ABC transporter, permease protein n=1 Tax=Variovorax paradoxus B4 RepID=T1X3Z2_VARPD
rbh
Variovorax paradoxus strain MEDvA23 contig_4, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ37008.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
ABC transporter, permease protein
rbh
|
|
SCNpilot_expt_500_p_scaffold_222_22
unknown
|
Not on your lists |
24002..24157
|
This feature has no annotations |
|
SCNpilot_expt_500_p_scaffold_222_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
24154..24726
|
HutD n=1 Tax=Variovorax paradoxus RepID=UPI0003606460
rbh
Variovorax paradoxus strain MEDvA23 contig_4, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ37007.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein; K09975 hypothetical protein
rbh
|
|
SCNpilot_expt_500_p_scaffold_222_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
24754..25980
|
Imidazolonepropionase {ECO:0000256|HAMAP-Rule:MF_00372, ECO:0000256|SAAS:SAAS00083112}; EC=3.5.2.7 {ECO:0000256|HAMAP-Rule:MF_00372, ECO:0000256|SAAS:SAAS00083112};; Imidazolone-5-propionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00372}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
imidazolonepropionase n=1 Tax=Variovorax paradoxus RepID=UPI00037C4481
rbh
|
|
SCNpilot_expt_500_p_scaffold_222_25
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
25977..27359
|
N-formimino-L-glutamate deiminase n=1 Tax=Variovorax paradoxus RepID=UPI00036B8F25
rbh
Formiminoglutamate deiminase {ECO:0000313|EMBL:EJL76695.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
|
|
SCNpilot_expt_500_p_scaffold_222_26
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
27371..28195
|
N-formylglutamate amidohydrolase n=1 Tax=Variovorax paradoxus RepID=UPI00035F9927
rbh
N-formylglutamate amidohydrolase {ECO:0000313|EMBL:EJL76694.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
|
|
SCNpilot_expt_500_p_scaffold_222_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
28236..29288
|
homocysteine S-methyltransferase; K00548 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
rbh
5-methyltetrahydrofolate--homocysteine methyltransferase n=1 Tax=Variovorax paradoxus RepID=UPI00037DC566
rbh
Variovorax paradoxus strain MEDvA23 contig_4, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ37003.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
|
|
SCNpilot_expt_500_p_scaffold_222_28
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
29456..30121
|
ligand-binding protein SH3 n=1 Tax=Variovorax paradoxus RepID=UPI00035F171B
rbh
SH3 type 3 domain protein {ECO:0000313|EMBL:EJL76691.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SH3 type 3 domain-containing protein
rbh
|
|
SCNpilot_expt_500_p_scaffold_222_29
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(30128..31054)
|
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2K8W8_9BURK
rbh
Transcriptional regulator {ECO:0000313|EMBL:EJL76690.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
LysR family transcriptional regulator
rbh
|
|
SCNpilot_expt_500_p_scaffold_222_30
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
31180..31617
|
Putative membrane protein n=1 Tax=Variovorax sp. CF313 RepID=J3CQW3_9BURK
Putative membrane protein {ECO:0000313|EMBL:EJL76689.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
transmembrane pair domain-containing protein
|