ggKbase home page

SCNpilot_expt_500_p_scaffold_381

Search features with annotation key words

Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_381_1
unknown

Not on your lists

1..84
DNA (84bp) protein (28aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_381_2
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

117..542
DNA (426bp) protein (142aa)
heat shock protein Hsp20 n=1 Tax=Variovorax paradoxus RepID=UPI000371A8E8
Molecular chaperone (Small heat shock protein) {ECO:0000313|EMBL:EJL80413.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hsp20; putative heat shock protein Hsp20
SCNpilot_expt_500_p_scaffold_381_3
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

619..1545
DNA (927bp) protein (309aa)
Deacetylase, histone deacetylase/acetoin utilization protein n=1 Tax=Variovorax sp. CF313 RepID=J3CXC3_9BURK rbh
Deacetylase, histone deacetylase/acetoin utilization protein {ECO:0000313|EMBL:EJL80414.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
histone deacetylase superfamily protein rbh
SCNpilot_expt_500_p_scaffold_381_4
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1598..3334)
DNA (1737bp) protein (579aa)
actetate permease n=1 Tax=Variovorax paradoxus RepID=UPI00037F8330 rbh
Acetate transporter ActP {ECO:0000313|EMBL:EWS65932.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
actP; cation/acetate symporter ActP; K14393 cation/acetate symporter rbh
SCNpilot_expt_500_p_scaffold_381_5
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3331..3648)
DNA (318bp) protein (106aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036C6F87
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGJ09277.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
SCNpilot_expt_500_p_scaffold_381_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3770..5746
DNA (1977bp) protein (659aa)
Acetyl-coenzyme A synthetase {ECO:0000256|HAMAP-Rule:MF_01123}; Short=AcCoA synthetase {ECO:0000256|HAMAP-Rule:MF_01123};; Short=Acs {ECO:0000256|HAMAP-Rule:MF_01123};; EC=6.2.1.1 {ECO:0000256|HAMAP-Rule:MF_01123};; Acetate--CoA ligase {ECO:0000256|HAMAP-Rule:MF_01123}; Acyl-activating enzyme {ECO:0000256|HAMAP-Rule:MF_01123}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
acetate/CoA ligase; K01895 acetyl-CoA synthetase [EC:6.2.1.1] rbh
acetyl-CoA synthetase n=1 Tax=Variovorax paradoxus RepID=UPI00035CF379 rbh
SCNpilot_expt_500_p_scaffold_381_7
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5756..6649)
DNA (894bp) protein (298aa)
beta-lactamase n=1 Tax=Variovorax paradoxus RepID=UPI000365D3BE rbh
Zn-dependent hydrolase, glyoxylase {ECO:0000313|EMBL:EJL78992.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
metallo-beta-lactamase superfamily protein rbh
SCNpilot_expt_500_p_scaffold_381_8
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6737..7060
DNA (324bp) protein (108aa)
ArsR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI000362AE92
Putative transcriptional regulator {ECO:0000313|EMBL:EJL78991.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
ArsR family transcriptional regulator
SCNpilot_expt_500_p_scaffold_381_9
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7060..7494
DNA (435bp) protein (145aa)
YeeE/YedE family protein n=1 Tax=Variovorax paradoxus RepID=UPI0003620F09
YeeE/YedE {ECO:0000313|EMBL:KIF79960.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
hypothetical protein; K07112
SCNpilot_expt_500_p_scaffold_381_10
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7506..7928
DNA (423bp) protein (141aa)
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI0003631B0B
transmembrane protein; K07112
Putative transporter component {ECO:0000313|EMBL:EWS61929.1}; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;"
SCNpilot_expt_500_p_scaffold_381_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7931..8449)
DNA (519bp) protein (173aa)
universal stress protein UspA n=1 Tax=Variovorax paradoxus RepID=UPI000361FBAC
UspA domain-containing protein
UspA domain protein {ECO:0000313|EMBL:ACS19449.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_500_p_scaffold_381_12
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8815..9276
DNA (462bp) protein (154aa)
universal stress protein UspA n=1 Tax=Variovorax paradoxus RepID=UPI0003824946
Universal stress protein {ECO:0000256|PIRNR:PIRNR006276}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative universal stress protein
SCNpilot_expt_500_p_scaffold_381_13
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9319..9942
DNA (624bp) protein (208aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035D40AE rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL80420.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_381_14
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9974..10195
DNA (222bp) protein (74aa)
transporter n=1 Tax=Variovorax paradoxus RepID=UPI00037BE655
Putative periplasmic or secreted lipoprotein {ECO:0000313|EMBL:EJL76432.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
transport-associated
SCNpilot_expt_500_p_scaffold_381_15
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10319..10759
DNA (441bp) protein (147aa)
Universal stress protein UspA-like protein n=1 Tax=Polaromonas sp. CF318 RepID=J3DBD7_9BURK
Universal stress protein UspA-like protein {ECO:0000313|EMBL:EJL88486.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
UspA domain-containing protein
SCNpilot_expt_500_p_scaffold_381_16
unknown

Not on your lists

10867..11016
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_381_17
Burkholderia sp. Ch1-1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11050..11766
DNA (717bp) protein (239aa)
ABC-type antimicrobial peptide transport system, ATPase component n=1 Tax=Burkholderia sp. Ch1-1 RepID=I2IR41_9BURK rbh
ABC-type antimicrobial peptide transport system, ATPase component {ECO:0000313|EMBL:EIF33193.1}; Flags: Precursor;; TaxID=243261 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. Ch1-1.;"
export system ATP-binding subunit; K02003 putative ABC transport system ATP-binding protein rbh
SCNpilot_expt_500_p_scaffold_381_18
Burkholderia sp. Ch1-1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11763..12848
DNA (1086bp) protein (362aa)
Multidrug resistance efflux pump n=1 Tax=Burkholderia sp. Ch1-1 RepID=I2IR42_9BURK rbh
Multidrug resistance efflux pump {ECO:0000313|EMBL:EIF33194.1}; Flags: Precursor;; TaxID=243261 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. Ch1-1.;"
export system membrane fusion protein; K02005 HlyD family secretion protein rbh
SCNpilot_expt_500_p_scaffold_381_19
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12845..14344
DNA (1500bp) protein (500aa)
RND transporter n=1 Tax=Pseudomonas fluorescens RepID=UPI000375DF38 rbh
RND transporter {ECO:0000313|EMBL:EXF94477.1}; TaxID=1042209 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens HK44.;"
RND efflux system outer membrane lipoprotein rbh
SCNpilot_expt_500_p_scaffold_381_20
Burkholderia sp. Ch1-1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14341..15483
DNA (1143bp) protein (381aa)
Putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component n=1 Tax=Burkholderia sp. Ch1-1 RepID=I2IR44_9BURK rbh
Putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component {ECO:0000313|EMBL:EIF33196.1}; Flags: Precursor;; TaxID=243261 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. Ch1-1.;"
antimicrobial peptide ABC transporter permease; K02004 putative ABC transport system permease protein rbh
SCNpilot_expt_500_p_scaffold_381_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15528..16127)
DNA (600bp) protein (200aa)
Putative phosphoesterase, PAP2 superfamily n=1 Tax=Variovorax paradoxus B4 RepID=T1X7U1_VARPD
putative phosphoesterase, PAP2 superfamily
Putative phosphoesterase, PAP2 superfamily {ECO:0000313|EMBL:AGU48404.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_p_scaffold_381_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16383..17252
DNA (870bp) protein (290aa)
LuxR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI0003697824
Variovorax paradoxus strain MEDvA23 contig_32, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31544.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
two component LuxR family transcriptional regulator
SCNpilot_expt_500_p_scaffold_381_23
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17259..18116)
DNA (858bp) protein (286aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003771C7C rbh
Universal stress protein UspA-like protein {ECO:0000313|EMBL:EJL76418.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative universal stress protein
SCNpilot_expt_500_p_scaffold_381_24
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18113..18502)
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000364AD80
Uncharacterized protein {ECO:0000313|EMBL:EJL76419.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_381_25
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18692..21064
DNA (2373bp) protein (791aa)
Probable phosphoketolase {ECO:0000256|HAMAP-Rule:MF_01403}; EC=4.1.2.- {ECO:0000256|HAMAP-Rule:MF_01403};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
phosphoketolase (EC:4.1.2.9); K01621 phosphoketolase [EC:4.1.2.9] rbh
phosphoketolase n=1 Tax=Variovorax paradoxus RepID=UPI000366BFFA rbh
SCNpilot_expt_500_p_scaffold_381_26
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21166..21894
DNA (729bp) protein (243aa)
chemotaxis protein CheY n=1 Tax=Variovorax paradoxus RepID=UPI0003677BE5 rbh
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:EJL76421.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
two component transcriptional regulator, winged helix family rbh
SCNpilot_expt_500_p_scaffold_381_27
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21887..24004
DNA (2118bp) protein (706aa)
histidine kinase n=1 Tax=Variovorax paradoxus RepID=UPI000365C2C9 rbh
PAS domain S-box {ECO:0000313|EMBL:EJL76422.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
multi-sensor hybrid histidine kinase rbh
SCNpilot_expt_500_p_scaffold_381_28
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24026..24793)
DNA (768bp) protein (256aa)
cAMP-binding protein n=1 Tax=Variovorax sp. CF313 RepID=J2KTQ9_9BURK rbh
cAMP-binding protein {ECO:0000313|EMBL:EJL76423.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
transcriptional regulator, Crp/Fnr family rbh
SCNpilot_expt_500_p_scaffold_381_29
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25029..25532
DNA (504bp) protein (168aa)
ornithine carbamoyltransferase n=1 Tax=Variovorax paradoxus RepID=UPI00036CC2A6
Ornithine carbamoyltransferase {ECO:0000313|EMBL:EJL76424.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative ornithine carbamoyltransferase
SCNpilot_expt_500_p_scaffold_381_30
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25669..26322
DNA (654bp) protein (218aa)
OsmY domain-containing protein n=1 Tax=Variovorax paradoxus RepID=UPI00036B5DB4 rbh
Putative periplasmic or secreted lipoprotein {ECO:0000313|EMBL:EJL76425.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative periplasmic phospholipid-binding protein rbh
Displaying items 1-30 of 62 in total

View Taxonomy