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SCNpilot_expt_500_p_scaffold_672

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Displaying items 1-30 of 37 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_672_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47..454)
DNA (408bp) protein (136aa)
Putative AP endonuclease, family 2 n=1 Tax=Variovorax paradoxus B4 RepID=T1XIS7_VARPD
Variovorax paradoxus strain MEDvA23 contig_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35778.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
putative AP endonuclease, family 2
SCNpilot_expt_500_p_scaffold_672_2
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

541..1485
DNA (945bp) protein (315aa)
Putative glutamine amidotransferase n=1 Tax=Variovorax sp. CF313 RepID=J2TM72_9BURK rbh
Putative glutamine amidotransferase {ECO:0000313|EMBL:EJL79682.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
peptidase C26; K07010 putative glutamine amidotransferase rbh
SCNpilot_expt_500_p_scaffold_672_3
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1507..3147)
DNA (1641bp) protein (547aa)
acyl-CoA dehydrogenase n=1 Tax=Variovorax paradoxus RepID=UPI000364A934 rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KGH15909.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
acyl-CoA dehydrogenase rbh
SCNpilot_expt_500_p_scaffold_672_4
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3179..4012)
DNA (834bp) protein (278aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000370E054 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFK57577.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_expt_500_p_scaffold_672_5
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4084..4719
DNA (636bp) protein (212aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003642386 rbh
TetR family transcriptional regulator {ECO:0000313|EMBL:KGH25904.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
TetR family transcriptional regulator
SCNpilot_expt_500_p_scaffold_672_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4721..4930)
DNA (210bp) protein (70aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000369F00A
Variovorax paradoxus strain MEDvA23 contig_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35780.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_672_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5023..5895)
DNA (873bp) protein (291aa)
N-formylglutamate amidohydrolase n=1 Tax=Variovorax paradoxus RepID=UPI000380B683 rbh
putative N-formylglutamate amidohydrolase rbh
Putative N-formylglutamate amidohydrolase {ECO:0000313|EMBL:AGU52466.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_p_scaffold_672_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5909..6871)
DNA (963bp) protein (321aa)
ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI0003625185 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACS21807.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_500_p_scaffold_672_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6983..7921
DNA (939bp) protein (313aa)
LysR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00037C3910 rbh
transcriptional regulator, LysR family rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AGU52464.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_p_scaffold_672_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7941..8927)
DNA (987bp) protein (329aa)
ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI00036BC64D rbh
Variovorax paradoxus strain MEDvA23 contig_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35781.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_672_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8931..11894)
DNA (2964bp) protein (988aa)
DNA topoisomerase {ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|SAAS:SAAS00046608};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
DNA topoisomerase iii; K03169 DNA topoisomerase III [EC:5.99.1.2] rbh
DNA topoisomerase III n=1 Tax=Variovorax sp. CF313 RepID=J2KHL1_9BURK rbh
SCNpilot_expt_500_p_scaffold_672_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12022..12645
DNA (624bp) protein (208aa)
Nuclear protein SET n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UYV6_VARPE rbh
Variovorax paradoxus strain MEDvA23 contig_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35783.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
nuclear protein set; K07117 rbh
SCNpilot_expt_500_p_scaffold_672_13
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12648..13460
DNA (813bp) protein (271aa)
biotin/acetyL-CoA-carboxylase ligase; K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] rbh
BirA, biotin-(Acetyl-CoA-carboxylase) ligase n=1 Tax=Variovorax sp. CF313 RepID=J2TM78_9BURK rbh
BirA, biotin-(Acetyl-CoA-carboxylase) ligase {ECO:0000313|EMBL:EJL79687.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_expt_500_p_scaffold_672_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13474..13722
DNA (249bp) protein (83aa)
Sporulation domain-containing protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UYV4_VARPE
Variovorax paradoxus strain MEDvA23 contig_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35785.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
sporulation domain-containing protein
SCNpilot_expt_500_p_scaffold_672_15
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13729..15171)
DNA (1443bp) protein (481aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
integral membrane sensor signal transduction histidine kinase; K07649 two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] rbh
Signal transduction histidine kinase n=1 Tax=Variovorax sp. CF313 RepID=J3CW42_9BURK rbh
SCNpilot_expt_500_p_scaffold_672_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15209..15883)
DNA (675bp) protein (225aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Variovorax sp. CF313 RepID=J2KHL5_9BURK rbh
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:EJL79690.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
winged helix family two component transcriptional regulator; K02483 two-component system, OmpR family, response regulator rbh
SCNpilot_expt_500_p_scaffold_672_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15950..16435)
DNA (486bp) protein (162aa)
Regulatory protein MarR n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UYU9_VARPE rbh
MarR family transcriptional regulator rbh
Regulatory protein MarR {ECO:0000313|EMBL:ADU40074.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_p_scaffold_672_18
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


16581..17687
DNA (1107bp) protein (369aa)
Protein RecA n=1 Tax=Variovorax sp. CF313 RepID=J2TM82_9BURK rbh
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
reca protein; K03553 recombination protein RecA rbh
SCNpilot_expt_500_p_scaffold_672_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17733..18194
DNA (462bp) protein (154aa)
Regulatory protein RecX n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UYU7_VARPE
RecX family transcriptional regulator; K03565 regulatory protein
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_p_scaffold_672_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18175..18606
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003747371
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU40071.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_p_scaffold_672_21
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18608..19717)
DNA (1110bp) protein (370aa)
Mandelate racemase/muconate lactonizing enzyme n=1 Tax=Burkholderia pseudomallei MSHR346 RepID=C4I1V7_BURPE rbh
mandelate racemase / muconate lactonizing enzyme, C-terminal domain protein rbh
Mandelate racemase/muconate lactonizing enzyme {ECO:0000313|EMBL:EEP50549.1}; TaxID=536230 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei MSHR346.;"
SCNpilot_expt_500_p_scaffold_672_22
Achromobacter insuavis, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19723..20550)
DNA (828bp) protein (276aa)
Amino acid ABC transporter/signal transduction system periplasmic binding protein n=1 Tax=Achromobacter xylosoxidans AXX-A RepID=F7SU26_ALCXX rbh
Amino acid ABC transporter/signal transduction system periplasmic binding protein {ECO:0000313|EMBL:EGP48471.1}; TaxID=1003200 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter insuavis AXX-A.;"
extracellular solute-binding protein, family 3 rbh
SCNpilot_expt_500_p_scaffold_672_23
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20583..21311)
DNA (729bp) protein (243aa)
arginine ABC transporter ATP-binding protein n=1 Tax=Comamonas testosteroni RepID=UPI0002E16562 rbh
ABC transporter related rbh
ABC transporter related protein {ECO:0000313|EMBL:AHC48717.1}; TaxID=1216976 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans NBRC 15126 = ATCC 27061.;"
SCNpilot_expt_500_p_scaffold_672_24
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21295..21951)
DNA (657bp) protein (219aa)
ABC transporter, membrane spanning protein n=1 Tax=Achromobacter xylosoxidans NH44784-1996 RepID=R4Y1T5_ALCXX rbh
ABC transporter, membrane spanning protein rbh
ABC transporter, membrane spanning protein {ECO:0000313|EMBL:CCH09952.1}; TaxID=1167634 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans NH44784-1996.;"
SCNpilot_expt_500_p_scaffold_672_25
Achromobacter insuavis, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21968..22651)
DNA (684bp) protein (228aa)
ABC transporter permease n=1 Tax=Comamonas testosteroni RepID=UPI0003101052 rbh
Amino acid ABC transporter permease {ECO:0000313|EMBL:EGP48468.1}; TaxID=1003200 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter insuavis AXX-A.;"
polar amino acid ABC transporter, inner membrane subunit rbh
SCNpilot_expt_500_p_scaffold_672_26
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22699..23931)
DNA (1233bp) protein (411aa)
Altronate hydrolase (EC:4.2.1.7) rbh
Altronate hydrolase {ECO:0000313|EMBL:CCH09950.1}; EC=4.2.1.7 {ECO:0000313|EMBL:CCH09950.1};; TaxID=1167634 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans NH44784-1996.;"
Altronate hydrolase n=1 Tax=Achromobacter xylosoxidans NH44784-1996 RepID=R4XYS7_ALCXX rbh
SCNpilot_expt_500_p_scaffold_672_27
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23946..24260)
DNA (315bp) protein (105aa)
dehydratase; D-galactarate dehydratase; altronate dehydratase; K01685 altronate hydrolase [EC:4.2.1.7]
D-galactarate dehydratase/Altronate hydrolase, family protein n=1 Tax=Achromobacter xylosoxidans C54 RepID=E5U902_ALCXX
Hydrolase {ECO:0000313|EMBL:AIR52851.1}; TaxID=562971 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans C54.;"
SCNpilot_expt_500_p_scaffold_672_28
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24272..24946)
DNA (675bp) protein (225aa)
Putative methyltransferase n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WKH9_VEREI rbh
putative methyltransferase rbh
Putative methyltransferase {ECO:0000313|EMBL:ABM58136.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_expt_500_p_scaffold_672_29
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25177..25947
DNA (771bp) protein (257aa)
3-hydroxybutyrate dehydrogenase (EC:1.1.1.30) rbh
3-hydroxybutyrate dehydrogenase {ECO:0000313|EMBL:ADX45583.1}; EC=1.1.1.30 {ECO:0000313|EMBL:ADX45583.1};; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
oxidoreductase n=1 Tax=Acidovorax avenae RepID=UPI000367D8E2 rbh
SCNpilot_expt_500_p_scaffold_672_30
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25961..26815
DNA (855bp) protein (285aa)
Transcriptional regulator, IclR family n=1 Tax=Achromobacter xylosoxidans NH44784-1996 RepID=R4XZF8_ALCXX rbh
Transcriptional regulator, IclR family rbh
Transcriptional regulator kdgR {ECO:0000313|EMBL:CKH88591.1}; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
Displaying items 1-30 of 37 in total

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