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SCNpilot_expt_500_p_scaffold_700

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_700_1
Pseudomonas sp. 21, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..9519)
DNA (9519bp) protein (3173aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003811C8F
Uncharacterized protein {ECO:0000313|EMBL:KJK03110.1}; TaxID=1619948 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 21.;"
outer membrane protein rbh
SCNpilot_expt_500_p_scaffold_700_2
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9698..10690)
DNA (993bp) protein (331aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036688FC
two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ACA95898.1}; TaxID=406425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia (strain MC0-3).;"
SCNpilot_expt_500_p_scaffold_700_3
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11071..13002)
DNA (1932bp) protein (644aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000374241D rbh
ATPase domain-containing protein
SCNpilot_expt_500_p_scaffold_700_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13062..13793
DNA (732bp) protein (244aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037804E0 rbh
two component transcriptional regulator, winged helix family
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:AGU51780.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_p_scaffold_700_5
Pseudomonas sp. GM55, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13850..14809)
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. GM55 RepID=J3GTY0_9PSED rbh
Uncharacterized protein {ECO:0000313|EMBL:EJM74952.1}; Flags: Precursor;; TaxID=1144333 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM55.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_700_6
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(14836..15885)
DNA (1050bp) protein (350aa)
RSp0483; ornithine cyclodeaminase (EC:4.3.1.12); K01750 ornithine cyclodeaminase [EC:4.3.1.12] rbh
Ornithine cyclodeaminase {ECO:0000313|EMBL:AGH86396.1}; EC=4.3.1.12 {ECO:0000313|EMBL:AGH86396.1};; TaxID=1262456 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum FQY_4.;"
Ornithine cyclodeaminase n=3 Tax=Ralstonia solanacearum RepID=M4ULD9_RALSL rbh
SCNpilot_expt_500_p_scaffold_700_7
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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16026..16448
DNA (423bp) protein (141aa)
AsnC family transcriptional regulator n=1 Tax=Bordetella sp. FB-8 RepID=UPI00036EF69C
AsnC family transcriptional regulator {ECO:0000313|EMBL:GAE48684.1}; TaxID=1414836 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. pruni str. MAFF 311562.;"
AsnC family transcriptional regulator
SCNpilot_expt_500_p_scaffold_700_8
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16618..17382
DNA (765bp) protein (255aa)
Glutamate/aspartate ABC transport protein high affinity periplasmic solute-binding protein n=2 Tax=Ralstonia solanacearum RepID=F6G8C8_RALS8 rbh
substrate-binding periplasmic (Pbp) abc transporter protein rbh
Putative substrate-binding periplasmic (Pbp) abc transporter protein {ECO:0000313|EMBL:CBJ53292.1}; TaxID=859656 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum CFBP2957.;"
SCNpilot_expt_500_p_scaffold_700_9
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17408..18196
DNA (789bp) protein (263aa)
Putative amino acid transmembrane ABC transporter protein n=1 Tax=Ralstonia solanacearum CMR15 RepID=D8NGT3_RALSL rbh
putative amino acid transmembrane ABC transporter protein rbh
Putative amino acid transmembrane ABC transporter protein {ECO:0000313|EMBL:CBJ40107.1}; TaxID=859655 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum CMR15.;"
SCNpilot_expt_500_p_scaffold_700_10
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18193..18936
DNA (744bp) protein (248aa)
amino-acid transporter subunit ; ATP-binding component of ABC superfamily (EC:3.6.3.28); K02028 polar amino acid transport system ATP-binding protein [EC:3.6.3.21] rbh
Amino-acid transporter subunit ATP-binding component of ABC superfamily {ECO:0000313|EMBL:CBJ53290.1}; EC=3.6.3.28 {ECO:0000313|EMBL:CBJ53290.1};; TaxID=859656 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum CFBP2957.;"
sulfate ABC transporter ATP-binding protein n=1 Tax=Ralstonia solanacearum RepID=UPI0003089B45 rbh
SCNpilot_expt_500_p_scaffold_700_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19129..20622
DNA (1494bp) protein (498aa)
Cytosine/uracil/thiamine/allantoin permease n=1 Tax=Variovorax sp. CF313 RepID=J2STQ8_9BURK rbh
Cytosine/uracil/thiamine/allantoin permease {ECO:0000313|EMBL:EJL68972.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
cytosine/purines uracil thiamine allantoin permease; K03457 nucleobase:cation symporter-1, NCS1 family rbh
SCNpilot_expt_500_p_scaffold_700_12
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20654..21391
DNA (738bp) protein (246aa)
hydantoin racemase (EC:5.1.99.5); K01797 [EC:5.1.99.-] rbh
Asp/Glu racemase n=1 Tax=Variovorax paradoxus RepID=UPI00037A9321 rbh
Hydantoin racemase {ECO:0000313|EMBL:EJL68973.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_expt_500_p_scaffold_700_13
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21406..22170
DNA (765bp) protein (255aa)
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J3CCQ0_9BURK rbh
Transcriptional regulator {ECO:0000313|EMBL:EJL68974.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
transcriptional regulator, GntR family rbh
SCNpilot_expt_500_p_scaffold_700_14
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22180..22740
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036EC157 rbh
XRE family transcriptional regulator {ECO:0000313|EMBL:KEC74480.1}; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. phaseoli CCGM1.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_700_15
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22867..24639
DNA (1773bp) protein (591aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000380E137 rbh
diguanylate cyclase/phosphodiesterase
Tax=GWA2_Burkholderiales_64_37_curated
SCNpilot_expt_500_p_scaffold_700_16
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24706..25689
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000363FC1B rbh
NAD-dependent epimerase/dehydratase family protein rbh
NAD-dependent epimerase/dehydratase family protein {ECO:0000313|EMBL:AGS23291.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_expt_500_p_scaffold_700_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25841..27331
DNA (1491bp) protein (497aa)
Xanthine permease n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CVQ2_VARPS rbh
xanthine permease; K03458 nucleobase:cation symporter-2, NCS2 family rbh
Xanthine permease {ECO:0000313|EMBL:ACS20555.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_500_p_scaffold_700_18
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27342..28166)
DNA (825bp) protein (275aa)
Aldo/keto reductase, diketogulonate reductase n=1 Tax=Variovorax sp. CF313 RepID=J3CCQ2_9BURK rbh
Aldo/keto reductase, diketogulonate reductase {ECO:0000313|EMBL:EJL68979.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
aldo/keto reductase rbh
SCNpilot_expt_500_p_scaffold_700_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28231..29700)
DNA (1470bp) protein (490aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
histidine kinase n=1 Tax=Variovorax paradoxus RepID=UPI00037370EB rbh
integral membrane sensor signal transduction histidine kinase
SCNpilot_expt_500_p_scaffold_700_20
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30051..31133
DNA (1083bp) protein (361aa)
tartrate dehydrogenase (EC:4.1.1.73); K07246 tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83] rbh
tartrate dehydrogenase n=1 Tax=Variovorax paradoxus RepID=UPI00036AD9E2 rbh
Tartrate dehydrogenase {ECO:0000313|EMBL:EJL68980.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_expt_500_p_scaffold_700_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31173..31700
DNA (528bp) protein (176aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V324_VARPE
binding-protein-dependent transport systems inner membrane component; K02033 peptide/nickel transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADU39163.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
Displaying 21 items

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