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SCNpilot_expt_500_p_scaffold_61_16

Organism: SCNPILOT_EXPT_750_P_Variovorax_66_42

near complete RP 51 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(13755..14792)

Top 3 Functional Annotations

Value Algorithm Source
Tripartite ATP-independent periplasmic transporter solute receptor, DctP family n=1 Tax=Polaromonas sp. CF318 RepID=J2LCK5_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 82.3
  • Coverage: 345.0
  • Bit_score: 577
  • Evalue 1.10e-161
  • rbh
Variovorax paradoxus strain MEDvA23 contig_75, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ23358.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 87.5
  • Coverage: 345.0
  • Bit_score: 607
  • Evalue 1.40e-170
TRAP dicarboxylate transporter subunit DctP similarity KEGG
DB: KEGG
  • Identity: 72.6
  • Coverage: 343.0
  • Bit_score: 503
  • Evalue 3.80e-140
  • rbh

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1038
ATGACCTCGATTTCACGCCGCCGCTTCGTCCAGTCATCGTCCGCCCTGTCGCTCGCGGCAGCGACGACGGGCGGGTTCTCGCCGTACGCCTTCGCACAGGAAAAGACGGTGGCGCTGCGCCTGTCGTCCTCGCACGTGGCGGACCTCAATTCCTCGCACTTCGCGTGGTCGCAGCTGATGCAGGCCAACCTGAAGAAGGCGGTGGGCGAGCAGATCCGCATCGACTACTTTCCGAACAACCAGCTCGGCAAGGAAAGCGACGTGGTGCAACAGGTGAAGGTGGGCTCCATCGACATGATGCTCACCGGCTCGTCGATCTGGGCCACCGTGACGCCGCAGCTCGGCATGCTCGACCTGGGCTACCTGTTCGACAGCTACGACCACGTGGCGCGCGCCATCGACGCGGGCGTGGGCGCCAAGCTCAACGACATGCTCGCCAGGAGCACCGGTTGCCAGATCATCACCTGGGGTGCGCACTACGGCGCGCGCAACGTGTACACCAAGCAGCCAGTCAAGTCGCTGGCGGACATCAGGAACGTCAAGCTGCGGGTGCTGCCCACGCCGGCGTTCATCGAGACTTTCAAGATCATGGGCGCGATCCCCACGCCCATTTCCTTCGGCGAGCTCTACATGGCGGCGCAGACAGGCGTGGTCGACGGCTTCGAGCACGACGCGGGCACGGTGCTGGCCAACAAGCTCAACGAGGTGGTCAAGCACTGCTGGATGACCGAGCACCTGTTCAGCCCGATGGTCTGCGTGGCCGGCAAGCGCGCGATGGACCGCGTGCCCGCCGCGCTGCGCCCGGCCTTCCTCAAGGCCGCGGCCGACTCCACGCTGCAGCAGCGGCAGATCGGCAACGAGCGCAGCCAGCAGGCCATCGACGACCTGAAGAAGACCGGCATCACTTTCACGCCGATGGCGAAGAGCGAGCGCGACCAGGTCCGCAAGGAAATGGAGACGAAGCTCTGGGCCGGCTTTGCCAAACAGTACCCGGAGACCGGGCCGCTGTTCGCGTCCATCAACGCCACGCGGGCCTGA
PROTEIN sequence
Length: 346
MTSISRRRFVQSSSALSLAAATTGGFSPYAFAQEKTVALRLSSSHVADLNSSHFAWSQLMQANLKKAVGEQIRIDYFPNNQLGKESDVVQQVKVGSIDMMLTGSSIWATVTPQLGMLDLGYLFDSYDHVARAIDAGVGAKLNDMLARSTGCQIITWGAHYGARNVYTKQPVKSLADIRNVKLRVLPTPAFIETFKIMGAIPTPISFGELYMAAQTGVVDGFEHDAGTVLANKLNEVVKHCWMTEHLFSPMVCVAGKRAMDRVPAALRPAFLKAAADSTLQQRQIGNERSQQAIDDLKKTGITFTPMAKSERDQVRKEMETKLWAGFAKQYPETGPLFASINATRA*