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SCNpilot_expt_500_p_scaffold_61

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Displaying items 1-30 of 664 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_61_1
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(77..871)
DNA (795bp) protein (265aa)
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Variovorax sp. CF313 RepID=J2KJJ2_9BURK rbh
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain {ECO:0000313|EMBL:EJL80360.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
two component LuxR family transcriptional regulator rbh
SCNpilot_expt_500_p_scaffold_61_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1253..1942
DNA (690bp) protein (230aa)
Lipoprotein, putative n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V8Y1_VARPE rbh
lipoprotein, putative rbh
Lipoprotein, putative {ECO:0000313|EMBL:ADU37304.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_p_scaffold_61_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2026..2964
DNA (939bp) protein (313aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V8Y2_VARPE rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADU37305.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_p_scaffold_61_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2981..3307
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V8Y3_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU37306.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_p_scaffold_61_5
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3357..3872
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CX85_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL80359.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_61_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3932..4297
DNA (366bp) protein (122aa)
Transcriptional regulator, ArsR family n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V8Y4_VARPE
ArsR family transcriptional regulator
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ADU37307.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_p_scaffold_61_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4294..4710
DNA (417bp) protein (139aa)
Putative transcriptional regulator, AsnC family n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V8Y5_VARPE
AsnC family transcriptional regulator
Putative transcriptional regulator, AsnC family {ECO:0000313|EMBL:ADU37308.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_p_scaffold_61_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4813..5370
DNA (558bp) protein (186aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036CD108 rbh
Variovorax paradoxus strain MEDvA23 contig_75, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ23352.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein; K09965 hypothetical protein
SCNpilot_expt_500_p_scaffold_61_9
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5367..6785
DNA (1419bp) protein (473aa)
Putative efflux protein, MATE family n=1 Tax=Variovorax sp. CF313 RepID=J3CXM3_9BURK rbh
Putative efflux protein, MATE family {ECO:0000313|EMBL:EJL80356.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
mate efflux family protein rbh
SCNpilot_expt_500_p_scaffold_61_10
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6817..7293)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2KJI5_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL80355.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
two component transcriptional regulator, winged helix family
SCNpilot_expt_500_p_scaffold_61_11
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7393..8757
DNA (1365bp) protein (455aa)
6-aminohexanoate-dimer hydrolase (EC:3.5.1.46); K01453 [EC:3.5.1.46] rbh
6-aminohexanoate-dimer hydrolase {ECO:0000313|EMBL:ABR90175.1}; EC=3.5.1.46 {ECO:0000313|EMBL:ABR90175.1};; TaxID=375286 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis).;"
6-aminohexanoate-dimer hydrolase n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6T266_JANMA rbh
SCNpilot_expt_500_p_scaffold_61_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8861..9682)
DNA (822bp) protein (274aa)
Amidohydrolase 2 n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q122T8_POLSJ rbh
Variovorax paradoxus strain MEDvA23 contig_75, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ23354.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
amidohydrolase 2; K07046 rbh
SCNpilot_expt_500_p_scaffold_61_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9722..10723)
DNA (1002bp) protein (334aa)
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein; K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95] rbh
Phosphoglycerate dehydrogenase-like oxidoreductase n=1 Tax=Variovorax sp. CF313 RepID=J3CX83_9BURK rbh
Variovorax paradoxus strain MEDvA23 contig_75, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ23355.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_expt_500_p_scaffold_61_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10758..11807)
DNA (1050bp) protein (350aa)
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2L543_9BURK rbh
Variovorax paradoxus strain MEDvA23 contig_75, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ23356.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
LacI family transcriptional regulator rbh
SCNpilot_expt_500_p_scaffold_61_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11850..13748)
DNA (1899bp) protein (633aa)
TRAP transporter, DctM subunit n=1 Tax=Polaromonas sp. CF318 RepID=J2TVU2_9BURK rbh
Variovorax paradoxus strain MEDvA23 contig_75, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ23357.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
putative tripartite ATP-independent periplasmic transporter, DctM subunit rbh
SCNpilot_expt_500_p_scaffold_61_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13755..14792)
DNA (1038bp) protein (346aa)
Tripartite ATP-independent periplasmic transporter solute receptor, DctP family n=1 Tax=Polaromonas sp. CF318 RepID=J2LCK5_9BURK rbh
Variovorax paradoxus strain MEDvA23 contig_75, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ23358.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
TRAP dicarboxylate transporter subunit DctP rbh
SCNpilot_expt_500_p_scaffold_61_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14968..15495
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037390CC rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU37317.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_p_scaffold_61_18
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15499..16323)
DNA (825bp) protein (275aa)
Putative peptidoglycan binding protein n=1 Tax=Rhizobium sp. CF142 RepID=J2L873_9RHIZ
Putative peptidoglycan binding protein {ECO:0000313|EMBL:EJJ29707.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_61_19
BJP_IG2069_Desfulfarculales_53_13, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16339..17217)
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Marinomonas mediterranea (strain ATCC 700492 / JCM 21426 / NBRC 103028 / MMB-1) RepID=F2K0H7_MARM1
hypothetical protein
Tax=BJP_IG2069_Desfulfarculales_53_13
SCNpilot_expt_500_p_scaffold_61_20
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17861..19330)
DNA (1470bp) protein (490aa)
FAD-containing monooxygenase EthA n=1 Tax=Afipia birgiae RepID=UPI0002FCE128 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS35653.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
flavin-binding family monooxygenase rbh
SCNpilot_expt_500_p_scaffold_61_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19347..20927)
DNA (1581bp) protein (527aa)
Drug resistance transporter, EmrB/QacA subfamily n=1 Tax=Variovorax sp. CF313 RepID=J2TNQ7_9BURK rbh
Variovorax paradoxus strain MEDvA23 contig_75, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ23360.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
EmrB/QacA subfamily drug resistance transporter rbh
SCNpilot_expt_500_p_scaffold_61_22
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21065..21694)
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CXL9_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL80351.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein; K09857 hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_61_23
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21691..23337)
DNA (1647bp) protein (549aa)
Qaraquat-inducible protein B n=1 Tax=Variovorax sp. CF313 RepID=J2KJH9_9BURK rbh
Qaraquat-inducible protein B {ECO:0000313|EMBL:EJL80350.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
mammalian cell entry related domain-containing protein; K06192 paraquat-inducible protein B rbh
SCNpilot_expt_500_p_scaffold_61_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23334..24080)
DNA (747bp) protein (249aa)
Paraquat-inducible protein A n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V8Z9_VARPE rbh
paraquat-inducible protein a; K03808 paraquat-inducible protein A rbh
Paraquat-inducible protein A {ECO:0000313|EMBL:ADU37322.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_500_p_scaffold_61_25
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24077..24724)
DNA (648bp) protein (216aa)
paraquat-inducible protein A n=1 Tax=Variovorax paradoxus RepID=UPI00035D2080 rbh
Putative paraquat-inducible protein A {ECO:0000313|EMBL:EJL80348.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
paraquat-inducible protein a; K03808 paraquat-inducible protein A rbh
SCNpilot_expt_500_p_scaffold_61_26
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24745..26103)
DNA (1359bp) protein (453aa)
Arabinose efflux permease family protein n=1 Tax=Variovorax sp. CF313 RepID=J2TNQ4_9BURK rbh
Arabinose efflux permease family protein {ECO:0000313|EMBL:EJL80347.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
major facilitator superfamily protein; K08169 MFS transporter, DHA2 family, multidrug resistance protein rbh
SCNpilot_expt_500_p_scaffold_61_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26206..27396)
DNA (1191bp) protein (397aa)
Drug resistance transporter, Bcr/CflA subfamily n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V902_VARPE rbh
Bcr/CflA subfamily drug resistance transporter; K07552 MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein rbh
Variovorax paradoxus strain MEDvA23 contig_75, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ23365.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_expt_500_p_scaffold_61_28
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27482..28813)
DNA (1332bp) protein (444aa)
monooxygenase n=1 Tax=Variovorax paradoxus RepID=UPI000362634B rbh
Variovorax paradoxus strain MEDvA23 contig_75, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ23366.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
nitrilotriacetate monooxygenase component A
SCNpilot_expt_500_p_scaffold_61_29
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28817..29677)
DNA (861bp) protein (287aa)
methyltransferase n=1 Tax=Variovorax paradoxus RepID=UPI00036F049B rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL80345.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_61_30
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29709..30506)
DNA (798bp) protein (266aa)
short-chain dehydrogenase n=1 Tax=Variovorax paradoxus RepID=UPI00037ACEAF rbh
Variovorax paradoxus strain MEDvA23 contig_75, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ23421.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
short chain dehydrogenase/reductase family oxidoreductase rbh
Displaying items 1-30 of 664 in total

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