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SCNpilot_expt_500_p_scaffold_61_21

Organism: SCNPILOT_EXPT_750_P_Variovorax_66_42

near complete RP 51 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(19347..20927)

Top 3 Functional Annotations

Value Algorithm Source
Drug resistance transporter, EmrB/QacA subfamily n=1 Tax=Variovorax sp. CF313 RepID=J2TNQ7_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 89.1
  • Coverage: 521.0
  • Bit_score: 911
  • Evalue 3.90e-262
  • rbh
Variovorax paradoxus strain MEDvA23 contig_75, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ23360.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 87.7
  • Coverage: 529.0
  • Bit_score: 913
  • Evalue 1.40e-262
EmrB/QacA subfamily drug resistance transporter similarity KEGG
DB: KEGG
  • Identity: 86.8
  • Coverage: 523.0
  • Bit_score: 898
  • Evalue 1.10e-258
  • rbh

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1581
ATGGCACAGATCGGCAAGGCGCCCTGCGACGACACGCTGATCCTGCACGGCGCCGGAGCGCAGGAAAGCGCCTGCCCCGAAGCCTCCAAGCCCTGGGTGCTGGCCGCCGCCATCGTCGGCTCCAGCATGGCGTTCATCGACGGCACCGTGGTCAATGTCGCGCTGCCGGCCATCCAGTCCGACCTGCATGCCACCGCCTTCCAGGCACAGTGGGTGGTCGAGTCCTATGCCTTGCTGCTGGCCGCGCTGCTTTTGGTGGGCGGCGCTCTGGGCGACCTTTACGGCCGGCGCCGTATCTTCGCGATCGGTGTCGGGCTCTTCGCCCTGTCTTCCGTGGCCTGTGCGCTCGCGGGCAGCGTGCAGCAGCTCATCGCGGCGCGGGCGGTGCAGGGCATCGGTGGCGCGCTGCTGGTGCCGGGCAGCCTCGCGCTCATCAGCGCCGCCTTTCCTGAAAAGGAACGCGGCAAGGCCATCGGCACCTGGTCGGGCTTCAGCGGCATCACGGCGGCGGTAGGGCCTGTGCTCGGCGGCTTCCTGGTCGATCACTTCTCGTGGACCTGGGCCTTTCTCATCAACCTGCCGATGGCGCTGCTGGTGCTGTGGATCGTGTGGCGTCACGTGCCGGAAAGCCGTGGCGCCTCGGCCGCCGGCGGGCTCGACGTGTGGGGCGCGTTGCTGGCCACCGCCGGGCTGGGCGGCATCGTCTATGCCTTCATCGAGGCGCCGACGCAGGGCTGGCGCGCACCGGCGGTGCTGGCCGCGCTGGCCATCGGCGTGCTGGGCAGCGCGGGCTTCTTCGTCGCCGAGCGTCGGGTGCGCTCGCCGATGCTGCCGCTCGGGCTGCTGCGCATCGGCAACTTCAGCGGCGCCAACCTGCTCACGTTGCTGCTTTACGCGGCGCTGGGCGGCGGGCTGTATTTCTTTCCGCTCAACCTGATCCAGGTGCAAGGCTACTCGGCCACGGTGGCGGGCGCGGCGCTGCTGCCGTTCATCTTCATCATGTTCGCGCTCTCGGGCTGGGCGGGGCAGCTGGTCGACCGCTTCGGGTCGCGCATTCCGCTGGTCGCCGGGCCTTCCATCGCCGCGGTTGGCTTCGCGCTGTTCGCGGTGCCGGGCGTCGGCGCGAGCTATTGGAGCGGCTTCCTGCCCGCCGTGGTGGTGCTGGGCCTTGGCATGGCGGTAACCGTCGCGCCACTCACCACCACCGTCATGAACGCGGTCGGGCCGGAGATGGCCGGGGTGGCTTCGGGCGTGAACAACGCGGTGTCGCGCGCGGCCGCGGTGCTGGCGATAGCGGTGTTCGGCGCGGTCATGGCCAGCGTCTTCGACGTGACGCTGGCGGACCAGTTGCGCGAGCTGGGTGCGTCGGCGCAGGTGTCGGCGTTCCTCGAAGGAGAACGCAGCAAGCTGGCGGGCGCGACGCTGCCGCCGGGTGTGGACGCGGCCACGGCGGCGGCGCTCAAGCGGGCCGTGGCGGAGTCGTTCGTGGCGGGGTTCCGGTGGGTGATGCTGCTGGGCTCGGGGTTGGCGCTGTTGAGCGCGGCGAGTGCCTGGGTGATGATCCGTCGCACGGAACCTTGA
PROTEIN sequence
Length: 527
MAQIGKAPCDDTLILHGAGAQESACPEASKPWVLAAAIVGSSMAFIDGTVVNVALPAIQSDLHATAFQAQWVVESYALLLAALLLVGGALGDLYGRRRIFAIGVGLFALSSVACALAGSVQQLIAARAVQGIGGALLVPGSLALISAAFPEKERGKAIGTWSGFSGITAAVGPVLGGFLVDHFSWTWAFLINLPMALLVLWIVWRHVPESRGASAAGGLDVWGALLATAGLGGIVYAFIEAPTQGWRAPAVLAALAIGVLGSAGFFVAERRVRSPMLPLGLLRIGNFSGANLLTLLLYAALGGGLYFFPLNLIQVQGYSATVAGAALLPFIFIMFALSGWAGQLVDRFGSRIPLVAGPSIAAVGFALFAVPGVGASYWSGFLPAVVVLGLGMAVTVAPLTTTVMNAVGPEMAGVASGVNNAVSRAAAVLAIAVFGAVMASVFDVTLADQLRELGASAQVSAFLEGERSKLAGATLPPGVDAATAAALKRAVAESFVAGFRWVMLLGSGLALLSAASAWVMIRRTEP*