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SCNpilot_expt_500_p_scaffold_3531_4

Organism: SCNPILOT_EXPT_750_P_Variovorax_66_42

near complete RP 51 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 4201..5499

Top 3 Functional Annotations

Value Algorithm Source
HlyD family secretion protein n=1 Tax=Variovorax paradoxus RepID=UPI0003815534 similarity UNIREF
DB: UNIREF100
  • Identity: 81.8
  • Coverage: 433.0
  • Bit_score: 672
  • Evalue 2.50e-190
  • rbh
HlyD family type I secretion membrane fusion protein; K12542 membrane fusion protein LapC similarity KEGG
DB: KEGG
  • Identity: 78.1
  • Coverage: 383.0
  • Bit_score: 583
  • Evalue 6.20e-164
Type I secretion membrane fusion protein, HlyD family {ECO:0000313|EMBL:ADU39197.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 78.1
  • Coverage: 383.0
  • Bit_score: 583
  • Evalue 2.80e-163

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1299
ATGGCAACGCCTGAAAAAATACGGGTGCGGGCGCCAGCCGCGGTCGGCATGGCCGTGCCGGCCGGTCTCGCGCCGGGCGCGCAGCCCCCACGTGGGAAATCTCCCGTCCAGAAGACAGGCCGCTCGAAGACAGCGCCCGCCGCCTACTATTCGCCGCCCGAGCCGCCGCTGCCGCGCGCATCGCTGCTCGTGTGGATCATCGCGGGGCTGCTGCTCGCGCTGCTGGCGTGGGCGTGGTCGTTCAAGCTCGACGAGGTGTCGACCGGCTCGGGCAAGGTGGTCCCTTCTTCCAGGGAGCAGATGATCCAATCGCTCGAAGGCGGCATCCTGGTGGACCTGAAGGTGCGCGAAGGCGACATCGTCGATGAGGGAGAGGTGCTCGCGCAACTGGACAGGACGAAGACCGAATCGACCGTGCAGGAGAGCGCTTCGCGCGTGCGTGCCGCGCTGGCGATGTCGGCGCGCCTCACGGCCGAAGTCGGCGGCACGCCGCTGGCGTTTCCGCCCGAAGTGAGCTCCGACGCCGACCTCGTGCGCACCGAGACCGCGCTCTACCAGTCGCGCCGCGAGCAGCTCGCGAGCAGTCTTTCGGGCGTGACGCAGGCGCTGTCGCTGATGCGCCGCGAGCTCGCGTTGACCGAGCCGCTGGTGGCGCGCGGCGCAGCGAGCGACGTCGAAGTGCTGCGGCTGAAGCGCCAGATCAACGAGGCCGAGACCAAGGCGGCCGACCTCAAGAGCCAGTACTACGTGAAGGCGCGCGAAGACCTCGCCAAGGCGAATGCCGAGATCGAGGCCCAGCGCTCGGTCACGCGCGGGCGCTCCGACTCGCTGACACGGTTGACCTTTGCGTCGCCGGTGCGCGGCATCGTGAAGGACATCGCGGTGACGACGGTGGGGGGCGTACTGCCGCCGGGCGGCAAGCTCATGGTGATCGTGCCGCTGGACGAAAAGCTGCTGGTGGAAGCCCGCATTTCGCCCCGCGACGTCGCCTTCATCCATCCGGGCCAGGAGGCGGCCGTGAAGGTAACGGCCTACGACTACGCCATCTTCGGCGACCTGCCCGGCAAGGTGACGACGATCTCGCCCGACACCATCCAGGACGACGTGAAGCGCGACGTGTACTACTACCGCGTCTACATCCGTACCGATGTCGACCACCTGAAGAACAAGAATGGGCAGAGCTTTCCGATCGTGCCCGGGATGATCGCCACGGTGGACATCCGCACGGGCAGCAAGTCGGTGCTGGACTATCTGCTCAAGCCGCTGAACAAGGCCGGCGAAGCCTTGCGTGAGCGCTGA
PROTEIN sequence
Length: 433
MATPEKIRVRAPAAVGMAVPAGLAPGAQPPRGKSPVQKTGRSKTAPAAYYSPPEPPLPRASLLVWIIAGLLLALLAWAWSFKLDEVSTGSGKVVPSSREQMIQSLEGGILVDLKVREGDIVDEGEVLAQLDRTKTESTVQESASRVRAALAMSARLTAEVGGTPLAFPPEVSSDADLVRTETALYQSRREQLASSLSGVTQALSLMRRELALTEPLVARGAASDVEVLRLKRQINEAETKAADLKSQYYVKAREDLAKANAEIEAQRSVTRGRSDSLTRLTFASPVRGIVKDIAVTTVGGVLPPGGKLMVIVPLDEKLLVEARISPRDVAFIHPGQEAAVKVTAYDYAIFGDLPGKVTTISPDTIQDDVKRDVYYYRVYIRTDVDHLKNKNGQSFPIVPGMIATVDIRTGSKSVLDYLLKPLNKAGEALRER*