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SCNpilot_expt_500_p_scaffold_259

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Displaying items 1-30 of 153 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_259_1
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2..802)
DNA (801bp) protein (267aa)
elongation factor Tu n=1 Tax=Microbacteriaceae RepID=UPI00037A8593
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
GTPase - translation elongation factors; K02358 elongation factor Tu
SCNpilot_expt_500_p_scaffold_259_2
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(933..3047)
DNA (2115bp) protein (705aa)
elongation factor G n=1 Tax=Microbacteriaceae RepID=UPI00035CDF87 rbh
elongation factor G rbh
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1389489 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. cynodontis DSM 46306.;"
SCNpilot_expt_500_p_scaffold_259_3
Agrococcus pavilionensis, Agrococcus, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(3135..3605)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Agrococcus pavilionensis RW1 RepID=U1MT42_9MICO
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1330458 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agrococcus.;" source="Agrococcus pavilionensis RW1.;"
30S ribosomal protein S7; K02992 small subunit ribosomal protein S7
SCNpilot_expt_500_p_scaffold_259_4
Curtobacterium flaccumfaciens, Curtobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(3611..3979)
DNA (369bp) protein (123aa)
30S ribosomal protein S12 n=1 Tax=Curtobacterium RepID=UPI00035EBDDC
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1292022 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Curtobacterium.;" source="Curtobacterium flaccumfaciens UCD-AKU.;"
rpsL; 30S ribosomal protein S12; K02950 small subunit ribosomal protein S12
SCNpilot_expt_500_p_scaffold_259_5
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4322..5011)
DNA (690bp) protein (230aa)
hypothetical protein SPAM21_06103 id=7720887 bin=CNBR_ACT species=Salinibacterium sp. PAMC 21357 genus=Salinibacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Uncharacterized protein {ECO:0000313|EMBL:ERK72770.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_259_6
Frigoribacterium sp. MEB024, Frigoribacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5008..5745)
DNA (738bp) protein (246aa)
hypothetical protein n=1 Tax=Leifsonia sp. 109 RepID=UPI0003623DE6
Contig_71, whole genome shotgun sequence {ECO:0000313|EMBL:KIU02301.1}; TaxID=1589899 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Frigoribacterium.;" source="Frigoribacterium sp. MEB024.;"
fimbrial assembly family protein
SCNpilot_expt_500_p_scaffold_259_7
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5742..6791)
DNA (1050bp) protein (350aa)
Pilus-associated protein pilM id=7720885 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Cell division protein FtsA {ECO:0000313|EMBL:ERK72772.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
type IV pilus assembly protein PilM; K02662 type IV pilus assembly protein PilM
SCNpilot_expt_500_p_scaffold_259_8
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6826..7653)
DNA (828bp) protein (276aa)
Type 4 prepilin-like proteins leader peptide-processing enzyme {ECO:0000256|RuleBase:RU003794}; EC=2.1.1.- {ECO:0000256|RuleBase:RU003794};; EC=3.4.23.43 {ECO:0000256|RuleBase:RU003794};; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
peptidase A24A domain-containing protein; K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
Type 4 prepilin-like proteins leader peptide-processing enzyme id=7720884 bin=CNBR_ACT species=Sanguibacter keddieii genus=Sanguibacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
SCNpilot_expt_500_p_scaffold_259_9
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7650..9467)
DNA (1818bp) protein (606aa)
Putative uncharacterized protein id=7720883 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Uncharacterized protein {ECO:0000313|EMBL:ERK72774.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_259_10
Frigoribacterium sp. MEB024, Frigoribacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9470..10153)
DNA (684bp) protein (228aa)
Putative uncharacterized protein id=7720882 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Contig_71, whole genome shotgun sequence {ECO:0000313|EMBL:KIU02304.1}; TaxID=1589899 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Frigoribacterium.;" source="Frigoribacterium sp. MEB024.;"
SCNpilot_expt_500_p_scaffold_259_11
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10150..11550)
DNA (1401bp) protein (467aa)
Putative uncharacterized protein id=7720881 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Uncharacterized protein {ECO:0000313|EMBL:EAR25717.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
SCNpilot_expt_500_p_scaffold_259_12
Cryobacterium sp. MLB-32, Cryobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11660..12085)
DNA (426bp) protein (142aa)
Putative uncharacterized protein id=7720880 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Uncharacterized protein {ECO:0000313|EMBL:KFF58382.1}; TaxID=1529318 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Cryobacterium.;" source="Cryobacterium sp. MLB-32.;"
Tfp pilus assembly protein PilE
SCNpilot_expt_500_p_scaffold_259_13
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12201..13463)
DNA (1263bp) protein (421aa)
Putative type IV fimbrial assembly protein PilC n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2T5K5_LEIAQ
Putative type IV fimbrial assembly protein PilC {ECO:0000313|EMBL:ERK72778.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
Type II secretion system F domain-containing protein; K02653 type IV pilus assembly protein PilC
SCNpilot_expt_500_p_scaffold_259_14
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13463..14995)
DNA (1533bp) protein (511aa)
Twitching motility protein n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2RW73_LEIAQ rbh
Twitching motility protein {ECO:0000313|EMBL:ERK72779.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
twitching motility protein rbh
SCNpilot_expt_500_p_scaffold_259_15
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15018..16673)
DNA (1656bp) protein (552aa)
hypothetical protein n=1 Tax=Leifsonia sp. 109 RepID=UPI0003651E90
Type II secretion system protein E {ECO:0000313|EMBL:EAR25722.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
type II secretion system protein E; K02652 type IV pilus assembly protein PilB rbh
SCNpilot_expt_500_p_scaffold_259_16
unknown

Not on your lists

comp(16818..17234)
DNA (417bp) protein (139aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_259_17
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17209..18012)
DNA (804bp) protein (268aa)
Uncharacterized protein n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AFF4_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EAR25710.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_259_18
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18147..22019)
DNA (3873bp) protein (1291aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
DNA-directed RNA polymerase subunit beta' id=7720829 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
DNA-directed RNA polymerase subunit beta' rbh
SCNpilot_expt_500_p_scaffold_259_19
Rathayibacter toxicus, Rathayibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22145..25360)
DNA (3216bp) protein (1072aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=145458 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Rathayibacter.;" source="Rathayibacter toxicus.;"
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta n=1 Tax=Agromyces italicus RepID=UPI0003B5B9E5
SCNpilot_expt_500_p_scaffold_259_20
Cellulomonas cellasea, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25631..26383)
DNA (753bp) protein (251aa)
hypothetical protein id=7719354 bin=CNBR_ACT species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=CNBR_ACT organism_group=Actinobacteria
Uncharacterized protein {ECO:0000313|EMBL:KGM02222.1}; TaxID=1408250 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas cellasea DSM 20118.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_259_21
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26603..27442
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Clavibacter michiganensis subsp. nebraskensis NCPPB 2581 RepID=M5BB53_9MICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCE76523.1}; TaxID=1097677 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. nebraskensis NCPPB 2581.;"
SCNpilot_expt_500_p_scaffold_259_22
Cryobacterium roopkundense, Cryobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27485..28627
DNA (1143bp) protein (381aa)
hypothetical protein n=1 Tax=Leifsonia sp. 109 RepID=UPI00036A5151 rbh
Glucose dehydrogenase {ECO:0000313|EMBL:KGJ82322.1}; TaxID=1001240 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Cryobacterium.;" source="Cryobacterium roopkundense.;"
secreted dehydrogenase rbh
SCNpilot_expt_500_p_scaffold_259_23
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28632..29084
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) RepID=A5CUD2_CLAM3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAN02719.1}; TaxID=443906 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382).;"
SCNpilot_expt_500_p_scaffold_259_24
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29186..29743
DNA (558bp) protein (186aa)
Putative uncharacterized protein id=7720820 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Uncharacterized protein {ECO:0000313|EMBL:EAR25738.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_259_25
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29813..30121)
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Cellulomonas sp. JC225 RepID=UPI00037ED840
Uncharacterized protein {ECO:0000313|EMBL:KJL35050.1}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-alanyl ligase
SCNpilot_expt_500_p_scaffold_259_26
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30160..30615)
DNA (456bp) protein (152aa)
dehydrogenase n=1 Tax=Agromyces italicus RepID=UPI0003B56504
Uncharacterized protein {ECO:0000313|EMBL:KJL36585.1}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
dehydrogenase with different specificities
SCNpilot_expt_500_p_scaffold_259_27
Cryobacterium sp. MLB-32, Cryobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30657..31151)
DNA (495bp) protein (165aa)
2-phosphosulfolactate phosphatase {ECO:0000256|SAAS:SAAS00085834}; EC=3.1.3.71 {ECO:0000256|SAAS:SAAS00085834};; TaxID=1529318 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Cryobacterium.;" source="Cryobacterium sp. MLB-32.;"
hypothetical protein n=1 Tax=Leifsonia sp. 109 RepID=UPI000365AA94
hypothetical protein
SCNpilot_expt_500_p_scaffold_259_28
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31378..32898
DNA (1521bp) protein (507aa)
ATP-dependent helicase (EC:3.6.1.-)
DEAD/DEAH box helicase domain protein n=2 Tax=Microbacterium RepID=H8E920_9MICO
DEAD/DEAH box helicase {ECO:0000313|EMBL:EXJ53228.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
SCNpilot_expt_500_p_scaffold_259_29
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33211..33846)
DNA (636bp) protein (212aa)
ADP-ribose pyrophosphatase n=1 Tax=Humibacter albus RepID=UPI0003B6C56A
Uncharacterized protein {ECO:0000313|EMBL:ERK69509.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_259_30
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33945..34574
DNA (630bp) protein (210aa)
Putative esterase n=1 Tax=Clavibacter michiganensis subsp. nebraskensis NCPPB 2581 RepID=M5BB82_9MICO
putative esterase
Putative esterase {ECO:0000313|EMBL:CCE76536.1}; TaxID=1097677 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. nebraskensis NCPPB 2581.;"
Displaying items 1-30 of 153 in total

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