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SCNpilot_expt_500_p_scaffold_918

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_918_1
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..15148)
DNA (15147bp) protein (5049aa)
hypothetical protein n=1 Tax=Xanthomonas axonopodis RepID=UPI00037CBD6C rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR70413.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
membrane protein of unknown function rbh
SCNpilot_expt_500_p_scaffold_918_2
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15458..16186)
DNA (729bp) protein (243aa)
cytochrome C biogenesis protein n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI0002895816 rbh
Cytochrome c biogenesis protein transmembrane region {ECO:0000313|EMBL:EGD57489.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
cytochrome c biogenesis transmembrane protein
SCNpilot_expt_500_p_scaffold_918_3
BJP_08E140C01_10KDA_Sphingomonadales_62_47, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16199..16654)
DNA (456bp) protein (152aa)
thioredoxin domain-containing protein n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI000288123A
putative thioredoxin
Tax=BJP_08E140C01_10KDA_Sphingomonadales_62_47
SCNpilot_expt_500_p_scaffold_918_4
Pseudomonas alcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16885..17526)
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Pseudomonas alcaligenes OT 69 RepID=U3HIY4_PSEAC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQM70765.1}; TaxID=1333854 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas alcaligenes OT 69.;"
SCNpilot_expt_500_p_scaffold_918_5
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(17523..18113)
DNA (591bp) protein (197aa)
RNA polymerase sigma-E factor protein n=1 Tax=Herbaspirillum sp. GW103 RepID=I3CPN5_9BURK
RNA polymerase sigma factor {ECO:0000313|EMBL:EOA02068.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
rpoE; RNA polymerase sigma-E factor protein; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_500_p_scaffold_918_6
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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18782..20065
DNA (1284bp) protein (428aa)
Cupriavidus basilensis strain 4G11 chromosome secondary, complete sequence {ECO:0000313|EMBL:AJG23587.1}; EC=3.5.1.47 {ECO:0000313|EMBL:AJG23587.1};; TaxID=68895 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis.;"
amidohydrolase (EC:3.5.1.32); K01451 hippurate hydrolase [EC:3.5.1.32] rbh
Amidohydrolase n=4 Tax=Ralstonia RepID=B2U9L7_RALPJ rbh
SCNpilot_expt_500_p_scaffold_918_7
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(20478..21533)
DNA (1056bp) protein (352aa)
zinc-binding dehydrogenase n=1 Tax=Erwinia carotovora RepID=UPI0001A435D3 rbh
alcohol dehydrogenase rbh
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
SCNpilot_expt_500_p_scaffold_918_8
unknown

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comp(21783..22034)
DNA (252bp) protein (84aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_918_9
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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22388..22735
DNA (348bp) protein (116aa)
Membrane protein n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5KAP4_STEMA
Membrane protein {ECO:0000313|EMBL:EQM72616.1}; TaxID=1333853 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia MF89.;"
putative phospholipid membrane-attached protein; K04065 hyperosmotically inducible periplasmic protein
SCNpilot_expt_500_p_scaffold_918_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(23013..24044)
DNA (1032bp) protein (344aa)
DNA ligase D; K01971 DNA ligase (ATP) [EC:6.5.1.1]
ATP-dependent DNA ligase n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003A8F079
Putative DNA ligase family protein {ECO:0000313|EMBL:EIL99286.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SCNpilot_expt_500_p_scaffold_918_11
Xanthomonas vasicola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(24316..24690)
DNA (375bp) protein (125aa)
Uncharacterized protein {ECO:0000313|EMBL:KGR60442.1}; TaxID=56459 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas vasicola.;"
Displaying 11 items

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