ggKbase home page

SCNpilot_expt_500_p_scaffold_1234

Search features with annotation key words

Displaying 22 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_1234_1
unknown

Not on your lists

comp(2..2458)
DNA (2457bp) protein (819aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_1234_2
Magnetospirillum magneticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2896..3258
DNA (363bp) protein (121aa)
30S ribosomal protein S6 n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=RS6_MAGSA
rpsF; 30S ribosomal protein S6; K02990 small subunit ribosomal protein S6
30S ribosomal protein S6 {ECO:0000255|HAMAP-Rule:MF_00360}; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
SCNpilot_expt_500_p_scaffold_1234_3
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3261..3518
DNA (258bp) protein (86aa)
30S ribosomal protein S18 n=2 Tax=Rhodospirillum rubrum RepID=RS18_RHORT
30S ribosomal protein S18; K02963 small subunit ribosomal protein S18
30S ribosomal protein S18 {ECO:0000255|HAMAP-Rule:MF_00270}; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
SCNpilot_expt_500_p_scaffold_1234_4
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3531..4013
DNA (483bp) protein (161aa)
50S ribosomal protein L9 n=1 Tax=Sphingomonas melonis RepID=UPI000370CF55
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
rplI; 50S ribosomal protein L9; K02939 large subunit ribosomal protein L9
SCNpilot_expt_500_p_scaffold_1234_5
marine actinobacterium MedAcidi-G2A, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4235..5137)
DNA (903bp) protein (301aa)
hypothetical protein n=1 Tax=alpha proteobacterium SCGC AAA027-C06 RepID=UPI0003623579
Carbohydrate kinase {ECO:0000313|EMBL:KIE49743.1}; Flags: Fragment;; TaxID=1550400 species="Bacteria; Actinobacteria.;" source="marine actinobacterium MedAcidi-G2A.;"
pfkB family carbohydrate kinase
SCNpilot_expt_500_p_scaffold_1234_6
Thalassospira xiamenensis, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5231..5959)
DNA (729bp) protein (243aa)
3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008}; EC=2.7.7.38 {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008};; CMP-2-keto-3-deoxyoctulosonic acid synthase {ECO:0000256|HAMAP-Rule:MF_00057}; TaxID=1123366 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira xiamenensis M-5 = DSM 17429.;"
3-deoxy-manno-octulosonate cytidylyltransferase (EC:2.7.7.38); K00979 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Thalassospira xiamenensis M-5 = DSM 17429 RepID=K2L9G3_9PROT
SCNpilot_expt_500_p_scaffold_1234_7
unknown

Not on your lists

6124..6462
DNA (339bp) protein (113aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_1234_8
Rickettsia bellii, Rickettsia, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6422..7063
DNA (642bp) protein (214aa)
endonuclease III; K10773 endonuclease III [EC:4.2.99.18]
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=1359194 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; belli group.;" source="Rickettsia bellii str. RML Mogi.;"
Endonuclease III n=2 Tax=Rickettsia bellii RepID=Q1RGX7_RICBR
SCNpilot_expt_500_p_scaffold_1234_9
Marinobacterium sp. AK27, Marinobacterium, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7060..7890
DNA (831bp) protein (277aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Shewanella frigidimarina (strain NCIMB 400) RepID=Q07YS0_SHEFN
Putrescine transport system permease protein PotI {ECO:0000313|EMBL:KEA63158.1}; TaxID=1232683 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacterium.;" source="Marinobacterium sp. AK27.;"
binding-protein-dependent transport system inner membrane protein; K11074 putrescine transport system permease protein
SCNpilot_expt_500_p_scaffold_1234_10
GWF2_Melainabacteria_37_15_curated, Melainabacteria, Bacteria

Not on your lists

7880..8434
DNA (555bp) protein (185aa)
tag; hypothetical protein; K01246 DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
3-methyladenine DNA glycosylase id=4078665 bin=GWF2_Melainabacteria_37_15 species=Oxalobacter formigenes genus=Oxalobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Melainabacteria_37_15 organism_group=Melainabacteria
Tax=GWF2_Melainabacteria_37_15_curated
SCNpilot_expt_500_p_scaffold_1234_11
Rickettsia endosymbiont of Ixodes pacificus, Rickettsia, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8446..9843
DNA (1398bp) protein (466aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0IZ18_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KJW03450.1}; TaxID=1133329 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia.;" source="Rickettsia endosymbiont of Ixodes pacificus.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_1234_12
R_Gammaproteobacteria_37_14, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9847..10416)
DNA (570bp) protein (190aa)
Bacterial regulatory s, tetR family protein n=1 Tax=Piscirickettsia salmonis LF-89 = ATCC VR-1361 RepID=U4TIC3_PISSA
TetR family transcriptional regulator
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_37_14_curated
SCNpilot_expt_500_p_scaffold_1234_13
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10516..11607
DNA (1092bp) protein (364aa)
hydroxyneurosporene-O-methyltransferase (EC:2.1.1.-)
O-methyltransferase n=1 Tax=Synechocystis sp. PCC 7509 RepID=L8KNH4_9SYNC
O-demethylpuromycin-O-methyltransferase {ECO:0000313|EMBL:EPX58906.1}; TaxID=1242864 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter fuscus DSM 2262.;"
SCNpilot_expt_500_p_scaffold_1234_14
Candidatus Midichloria mitochondrii, Candidatus Midichloria, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11801..12445
DNA (645bp) protein (215aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Midichloria mitochondrii (strain IricVA) RepID=F7XVH9_MIDMI
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:AEI88678.1}; TaxID=696127 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Candidatus Midichloriaceae; Candidatus Midichloria.;" source="Midichloria mitochondrii (strain IricVA).;"
SCNpilot_expt_500_p_scaffold_1234_15
Rickettsia felis, Rickettsia, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12474..13670
DNA (1197bp) protein (399aa)
Putative to amino acid permeases n=1 Tax=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) RepID=Q4UL60_RICFE
to amino acid permeases; K03834 tyrosine-specific transport protein
Tryptophan/tyrosine permease family protein {ECO:0000313|EMBL:KJV59201.1}; TaxID=1359196 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group.;" source="Rickettsia felis str. Pedreira.;"
SCNpilot_expt_500_p_scaffold_1234_16
unknown

Not on your lists

comp(13701..14732)
DNA (1032bp) protein (344aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_1234_17
unknown

Not on your lists

comp(14768..14986)
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_1234_18
Rickettsiales bacterium Ac37b, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15144..15602)
DNA (459bp) protein (153aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:AIL64559.1}; EC=2.7.8.5 {ECO:0000313|EMBL:AIL64559.1};; TaxID=1528098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales.;" source="Rickettsiales bacterium Ac37b.;"
pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5); K00995 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Rickettsiaceae bacterium Os18 RepID=UPI00036C6F79
SCNpilot_expt_500_p_scaffold_1234_19
Rickettsiales bacterium Ac37b, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15753..16961)
DNA (1209bp) protein (403aa)
DNA recombination protein RmuC homolog n=9 Tax=Rickettsia prowazekii RepID=RMUC_RICPR
DNA recombination protein rmuC {ECO:0000313|EMBL:AIL65432.1}; TaxID=1528098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales.;" source="Rickettsiales bacterium Ac37b.;"
hypothetical protein; K09760 DNA recombination protein RmuC
SCNpilot_expt_500_p_scaffold_1234_20
Bartonella rochalimae, Bartonella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16993..18348
DNA (1356bp) protein (452aa)
glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase (EC:2.7.7.23); K04042 bifunctional UDP-N-acetylglucosamine pyrophosphorylase / Glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
Bifunctional protein GlmU n=1 Tax=Bartonella rochalimae ATCC BAA-1498 RepID=E6YLJ3_9RHIZ
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; TaxID=685782 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bartonellaceae; Bartonella.;" source="Bartonella rochalimae ATCC BAA-1498.;"
SCNpilot_expt_500_p_scaffold_1234_21
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


18428..18760
DNA (333bp) protein (111aa)
50S ribosomal protein L21 n=1 Tax=Rickettsiaceae bacterium Os18 RepID=UPI00035E13B6
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
50S ribosomal protein L21; K02888 large subunit ribosomal protein L21
SCNpilot_expt_500_p_scaffold_1234_22
Orientia chuto, Orientia, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


18772..19044
DNA (273bp) protein (91aa)
50S ribosomal protein L27 n=1 Tax=Orientia tsutsugamushi (strain Ikeda) RepID=RL27_ORITI
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=1359168 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Orientia.;" source="Orientia chuto str. Fuller.;"
rpmA; 50S ribosomal protein L27; K02899 large subunit ribosomal protein L27
Displaying 22 items

View Taxonomy