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SCNpilot_expt_500_p_scaffold_567

Search features with annotation key words

Displaying items 1-30 of 31 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_567_1
Cylindrospermum stagnale, Cylindrospermum, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(54..389)
DNA (336bp) protein (112aa)
Putative metal-dependent hydrolase n=1 Tax=Cylindrospermum stagnale PCC 7417 RepID=K9WVB5_9NOST
putative metal-dependent hydrolase
Putative metal-dependent hydrolase {ECO:0000313|EMBL:AFZ23726.1}; TaxID=56107 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Cylindrospermum.;" source="Cylindrospermum stagnale PCC 7417.;"
SCNpilot_expt_500_p_scaffold_567_2
Rhodospirillaceae bacterium BRH_c57, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(571..1299)
DNA (729bp) protein (243aa)
Putative metal-dependent hydrolase n=1 Tax=Rivularia sp. PCC 7116 RepID=K9RLU0_9CYAN
Metal-dependent hydrolase {ECO:0000313|EMBL:KJS40007.1}; TaxID=1629718 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae.;" source="Rhodospirillaceae bacterium BRH_c57.;"
putative metal-dependent hydrolase
SCNpilot_expt_500_p_scaffold_567_3
Rhodospirillaceae bacterium BRH_c57, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1299..4328)
DNA (3030bp) protein (1010aa)
type I site-specific deoxyribonuclease HsdR-like protein (EC:3.1.21.3) rbh
HsdR family type I site-specific deoxyribonuclease n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3JMW2_9RHIZ rbh
Restriction endonuclease subunit R {ECO:0000313|EMBL:KJS39991.1}; TaxID=1629718 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae.;" source="Rhodospirillaceae bacterium BRH_c57.;"
SCNpilot_expt_500_p_scaffold_567_4
R_RIF_OD1_13_53_17, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(4321..5607)
DNA (1287bp) protein (429aa)
restriction modification system DNA specificity domain; K01154 type I restriction enzyme, S subunit [EC:3.1.21.3]
Restriction modification system DNA specificity domain n=1 Tax=Bacillus cellulosilyticus (strain ATCC 21833 / DSM 2522 / FERM P-1141 / JCM 9156 / N-4) RepID=E6TZV0_BACCJ
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_13_53_17_curated
SCNpilot_expt_500_p_scaffold_567_5
Magnetospira sp. QH-2, Magnetospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5597..7105)
DNA (1509bp) protein (503aa)
type I site-specific DNA-methyltransferase HsdM-like protein (EC:2.1.1.72) rbh
Type I site-specific DNA-methyltransferase HsdM-like protein n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5S258_RHIET rbh
Putative type I restriction-modification system M subunit HsdM {ECO:0000313|EMBL:CCQ72768.1}; TaxID=1288970 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospira.;" source="Magnetospira sp. QH-2.;"
SCNpilot_expt_500_p_scaffold_567_6
Candidatus Pelagibacter ubique, Candidatus Pelagibacter, Pelagibacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7388..8191)
DNA (804bp) protein (268aa)
4-hydroxybenzoate octaprenyltransferase {ECO:0000256|SAAS:SAAS00188627}; EC=2.5.1.- {ECO:0000256|SAAS:SAAS00188633};; TaxID=1096769 species="Bacteria; Proteobacteria; Alphaproteobacteria; Pelagibacterales; Pelagibacteraceae; Candidatus Pelagibacter.;" source="Candidatus Pelagibacter ubique HIMB083.;"
ubiA; 4-hydroxybenzoate octaprenyltransferase (EC:2.5.1.-); K03179 4-hydroxybenzoate octaprenyltransferase [EC:2.5.1.-]
UPI0003D1A01B related cluster n=1 Tax=unknown RepID=UPI0003D1A01B
SCNpilot_expt_500_p_scaffold_567_7
Rickettsia heilongjiangensis, Rickettsia, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8166..8723)
DNA (558bp) protein (186aa)
Thiol:disulfide interchange protein n=1 Tax=Rickettsia heilongjiangensis (strain ATCC VR-1524 / 054) RepID=G0GXY0_RICH0
thiol:disulfide interchange protein
Thiol:disulfide interchange protein {ECO:0000313|EMBL:AEK74589.1}; TaxID=1032845 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group.;" source="Rickettsia heilongjiangensis (strain ATCC VR-1524 / 054).;"
SCNpilot_expt_500_p_scaffold_567_8
Rickettsiales bacterium Ac37b, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8836..9846)
DNA (1011bp) protein (337aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; TaxID=1528098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales.;" source="Rickettsiales bacterium Ac37b.;"
aspartate-semialdehyde dehydrogenase; K00133 aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] rbh
Aspartate-semialdehyde dehydrogenase n=1 Tax=Rickettsia bellii (strain OSU 85-389) RepID=A8GWX3_RICB8 rbh
SCNpilot_expt_500_p_scaffold_567_9
Leptospira licerasiae, Leptospira, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

9959..10459
DNA (501bp) protein (167aa)
phospholipid hydroperoxide glutathione peroxidase (EC:1.11.1.9); K00432 glutathione peroxidase [EC:1.11.1.9]
Glutathione peroxidase n=2 Tax=Leptospira licerasiae RepID=I0XL93_9LEPT
Glutathione peroxidase {ECO:0000256|RuleBase:RU000499}; TaxID=1049972 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira licerasiae serovar Varillal str. VAR 010.;"
SCNpilot_expt_500_p_scaffold_567_10
Candidatus Rickettsia asemboensis, Rickettsia, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10543..10938
DNA (396bp) protein (132aa)
Putative lipoprotein n=1 Tax=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) RepID=Q4UMD2_RICFE
Uncharacterized protein {ECO:0000313|EMBL:KIJ88915.1}; TaxID=1068590 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group.;" source="Candidatus Rickettsia asemboensis.;"
lipoprotein
SCNpilot_expt_500_p_scaffold_567_11
unknown

Not on your lists

11107..11514
DNA (408bp) protein (136aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_567_12
Thalassospira sp. HJ, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11622..12779
DNA (1158bp) protein (386aa)
Uncharacterized protein n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2LZ39_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KJE33691.1}; TaxID=1616823 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira sp. HJ.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_567_13
Crinalium epipsammum, Crinalium, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(12776..13816)
DNA (1041bp) protein (347aa)
mannitol dehydrogenase (EC:1.1.1.255)
Mannitol dehydrogenase {ECO:0000313|EMBL:AFZ12325.1}; EC=1.1.1.255 {ECO:0000313|EMBL:AFZ12325.1};; TaxID=1173022 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Crinalium.;" source="Crinalium epipsammum PCC 9333.;"
Mannitol dehydrogenase n=1 Tax=Crinalium epipsammum PCC 9333 RepID=K9VYT5_9CYAN
SCNpilot_expt_500_p_scaffold_567_14
unknown

Not on your lists

comp(13879..16152)
DNA (2274bp) protein (758aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_567_15
unknown

Not on your lists

comp(16419..20030)
DNA (3612bp) protein (1204aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_567_16
Azospirillum sp. CAG:239, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20042..20497)
DNA (456bp) protein (152aa)
Transcriptional repressor NrdR n=1 Tax=Azospirillum sp. CAG:239 RepID=R6IYG3_9PROT
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=1262705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum; environmental samples.;" source="Azospirillum sp. CAG:239.;"
nrdR; transcriptional regulator NrdR; K07738 transcriptional repressor NrdR
SCNpilot_expt_500_p_scaffold_567_17
Desulfurispirillum indicum, Desulfurispirillum, Chrysiogenales, Chrysiogenetes, Chrysiogenetes, Bacteria

Not on your lists

20758..21000
DNA (243bp) protein (81aa)
antitoxin n=1 Tax=Salinivibrio costicola RepID=UPI0003955780
prevent-host-death family protein
Prevent-host-death family protein {ECO:0000313|EMBL:ADU66716.1}; TaxID=653733 species="Bacteria; Chrysiogenetes; Chrysiogenales; Chrysiogenaceae; Desulfurispirillum.;" source="Desulfurispirillum indicum (strain ATCC BAA-1389 / S5).;"
SCNpilot_expt_500_p_scaffold_567_18
R_Gammaproteobacteria_37_34, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21079..22167
DNA (1089bp) protein (363aa)
Putative uncharacterized protein n=1 Tax=Protochlamydia amoebophila (strain UWE25) RepID=Q6MA63_PARUW rbh
hypothetical protein rbh
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_37_34_curated
SCNpilot_expt_500_p_scaffold_567_19
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22256..24817
DNA (2562bp) protein (854aa)
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
ATP-dependent Clp protease ATP-binding subunit id=4908542 bin=GWC2_Alphaproteobacteria_42_16 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
clpB; endopeptidase Clp ATP-binding chain B ClpB; K03695 ATP-dependent Clp protease ATP-binding subunit ClpB
SCNpilot_expt_500_p_scaffold_567_20
unknown

Not on your lists

24886..25896
DNA (1011bp) protein (337aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_567_21
Hassallia byssoidea, Hassallia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

25960..26454
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CX80_9BACT
Heavy metal transporter {ECO:0000313|EMBL:KIF33551.1}; TaxID=1304833 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Hassallia.;" source="Hassallia byssoidea VB512170.;"
heavy metal transport/detoxification protein
SCNpilot_expt_500_p_scaffold_567_22
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26464..27243
DNA (780bp) protein (260aa)
bdhA; D-beta-hydroxybutyrate dehydrogenase (EC:1.1.1.30); K00019 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30]
D-beta-hydroxybutyrate dehydrogenase (BDH) (3-hydroxybutyrate dehydrogenase) (3-HBDH) {ECO:0000313|EMBL:CAL61960.1}; EC=1.1.1.30 {ECO:0000313|EMBL:CAL61960.1};; TaxID=204773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas.;" source="Herminiimonas arsenicoxydans.;"
D-beta-hydroxybutyrate dehydrogenase (BDH) (3-hydroxybutyrate dehydrogenase) (3-HBDH) n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G623_HERAR
SCNpilot_expt_500_p_scaffold_567_23
Marinomonas profundimaris, Marinomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27575..28654
DNA (1080bp) protein (360aa)
putrescine/spermidine ABC transporter substrate-binding protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E948C5
Putrescine-binding periplasmic protein {ECO:0000256|PIRNR:PIRNR019574}; TaxID=1208321 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Marinomonas.;" source="Marinomonas profundimaris.;"
family 1 extracellular solute-binding protein
SCNpilot_expt_500_p_scaffold_567_24
unknown

Not on your lists

28731..30242
DNA (1512bp) protein (504aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_567_25
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30707..31963)
DNA (1257bp) protein (419aa)
3-oxoacyl-(acyl carrier protein) synthase II; K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] rbh
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=2 Tax=Rhodospirillum rubrum RepID=G2T8A8_RHORU rbh
SCNpilot_expt_500_p_scaffold_567_26
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31972..32208)
DNA (237bp) protein (79aa)
Acyl carrier protein n=1 Tax=Caenispirillum salinarum AK4 RepID=K9HIJ9_9PROT
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
acpP; transit peptide-acyl carrier protein fusion protein
SCNpilot_expt_500_p_scaffold_567_27
R_Alphaproteobacteria_40_19, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32240..32980)
DNA (741bp) protein (247aa)
fabG; 3-oxoacyl-ACP reductase (EC:1.1.1.100); K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
3-oxoacyl-(Acyl-carrier-protein) reductase id=3924191 bin=GWC2_Alphaproteobacteria_42_16 species=Beijerinckia indica genus=Beijerinckia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Tax=RIFCSPLOWO2_02_FULL_Alphaproteobacteria_40_19_curated
SCNpilot_expt_500_p_scaffold_567_28
unknown

Not on your lists

33189..34208
DNA (1020bp) protein (340aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_567_29
Rickettsiales bacterium Ac37b, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34291..34767
DNA (477bp) protein (159aa)
Lipopolysaccharide ABC transporter, periplasmic protein LptA n=2 Tax=Geobacter metallireducens RepID=Q39W57_GEOMG
Lipopolysaccharide transport periplasmic protein LptA {ECO:0000313|EMBL:AIL65155.1}; TaxID=1528098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales.;" source="Rickettsiales bacterium Ac37b.;"
OstA family protein; K09774 lipopolysaccharide export system protein LptA
SCNpilot_expt_500_p_scaffold_567_30
R_Alphaproteobacteria_40_19, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34775..35494
DNA (720bp) protein (240aa)
ABC transporter-like protein; K06861 lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-]
ABC transporter related n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IBD1_XANP2
Tax=RIFCSPLOWO2_02_FULL_Alphaproteobacteria_40_19_curated
Displaying items 1-30 of 31 in total

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