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SCNpilot_expt_500_p_scaffold_400

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_400_1
Flavobacteriales bacterium BRH_c54, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2..5359)
DNA (5358bp) protein (1786aa)
hypothetical protein id=7719100 bin=BACIGN_2 species=Indibacter alkaliphilus genus=Indibacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
Uncharacterized protein {ECO:0000313|EMBL:KJS05178.1}; TaxID=1629721 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales.;" source="Flavobacteriales bacterium BRH_c54.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_400_2
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(5323..6528)
DNA (1206bp) protein (402aa)
hypothetical protein id=7719099 bin=BACIGN_2 species=Fibrobacter succinogenes genus=Fibrobacter taxon_order=Fibrobacterales taxon_class=Fibrobacteria phylum=Fibrobacteres tax=BACIGN_2 organism_group=Unknown_CP rbh
hypothetical protein
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_500_p_scaffold_400_3
unknown

Not on your lists

comp(6525..7253)
DNA (729bp) protein (243aa)
id=7719098 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
SCNpilot_expt_500_p_scaffold_400_4
unknown

Not on your lists

comp(7250..8062)
DNA (813bp) protein (271aa)
id=7719097 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
SCNpilot_expt_500_p_scaffold_400_5
Flavobacteriales bacterium BRH_c54, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8059..14577)
DNA (6519bp) protein (2173aa)
hypothetical protein id=7719096 bin=BACIGN_2 species=Fulvivirga imtechensis genus=Fulvivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
Uncharacterized protein {ECO:0000313|EMBL:KJS05180.1}; TaxID=1629721 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales.;" source="Flavobacteriales bacterium BRH_c54.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_400_6
unknown

Not on your lists

comp(14707..15261)
DNA (555bp) protein (185aa)
id=7719095 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
SCNpilot_expt_500_p_scaffold_400_7
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated, Bacteroidetes, Bacteria

Not on your lists

comp(15258..15851)
DNA (594bp) protein (198aa)
Outer membrane protein (OmpH-like) id=7719094 bin=BACIGN_2 species=Fulvivirga imtechensis genus=Fulvivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated
SCNpilot_expt_500_p_scaffold_400_8
GWE2_Bacteroidetes_29_8_curated, Bacteroidetes, Bacteria

Not on your lists

comp(15905..18241)
DNA (2337bp) protein (779aa)
id=7719093 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
Tax=GWE2_Bacteroidetes_29_8_curated
SCNpilot_expt_500_p_scaffold_400_9
unknown

Not on your lists

comp(18427..18555)
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_400_10

Not on your lists

18642..19115
DNA (474bp) protein (158aa)
bacterioferritin comigratory protein id=7719092 bin=BACIGN_2 species=Plesiocystis pacifica genus=Plesiocystis taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=BACIGN_2 organism_group=Unknown_CP rbh
Peroxiredoxin {ECO:0000313|EMBL:AIF04781.1}; TaxID=1457936 species="Archaea; Euryarchaeota; environmental samples.;" source="uncultured marine group II/III euryarchaeote KM3_176_D12.;"
bacterioferritin comigratory protein
SCNpilot_expt_500_p_scaffold_400_11
unknown

Not on your lists

comp(19323..19958)
DNA (636bp) protein (212aa)
id=7719091 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
SCNpilot_expt_500_p_scaffold_400_12
unknown

Not on your lists

comp(20002..20325)
DNA (324bp) protein (108aa)
id=7719090 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP
SCNpilot_expt_500_p_scaffold_400_13
Candidatus Accumulibacter sp. SK-12, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20593..20961)
DNA (369bp) protein (123aa)
hypothetical protein id=7719089 bin=BACIGN_2 species=Nostoc punctiforme genus=Nostoc taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=BACIGN_2 organism_group=Unknown_CP
Uncharacterized protein {ECO:0000313|EMBL:EXI68636.1}; TaxID=1454001 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-12.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_400_14
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

comp(21411..21788)
DNA (378bp) protein (126aa)
glycine cleavage system H protein; K02437 glycine cleavage system H protein id=7719088 bin=BACIGN_2 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP
glycine cleavage system H protein; K02437 glycine cleavage system H protein
Tax=BJP_IG2069_Ignavibacteriae_38_11
SCNpilot_expt_500_p_scaffold_400_15
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(21791..23131)
DNA (1341bp) protein (447aa)
acetyl-CoA carboxylase, biotin carboxylase; K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] id=7719087 bin=BACIGN_2 species=Niastella koreensis genus=Niastella taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
acetyl-CoA carboxylase, biotin carboxylase; K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_500_p_scaffold_400_16
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(23147..23623)
DNA (477bp) protein (159aa)
acetyl-CoA carboxylase, biotin carboxyl carrier protein; K02160 acetyl-CoA carboxylase biotin carboxyl carrier protein id=7719086 bin=BACIGN_2 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=BACIGN_2 organism_group=Unknown_CP rbh
acetyl-CoA carboxylase, biotin carboxyl carrier protein; K02160 acetyl-CoA carboxylase biotin carboxyl carrier protein
Acetyl-CoA carboxylase, biotin carboxyl carrier protein {ECO:0000313|EMBL:AEN74108.1}; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus SG0.5JP17-172.;"
SCNpilot_expt_500_p_scaffold_400_17
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(23681..24247)
DNA (567bp) protein (189aa)
translation elongation factor P (EF-P); K02356 elongation factor P id=7719085 bin=BACIGN_2 species=Solitalea canadensis genus=Solitalea taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
translation elongation factor P
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_500_p_scaffold_400_18
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(24519..25229)
DNA (711bp) protein (237aa)
tpn50; OmpA family outer membrane protein id=7719084 bin=BACIGN_2 species=Cytophaga hutchinsonii genus=Cytophaga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
tpn50; OmpA family outer membrane protein
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_500_p_scaffold_400_19
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(25233..26240)
DNA (1008bp) protein (336aa)
ribosome assembly protein 4 id=7719083 bin=BACIGN_2 species=Arthrospira sp. PCC 8005 genus=Arthrospira taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=BACIGN_2 organism_group=Unknown_CP rbh
serine/threonine protein kinase with WD40 repeats
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_500_p_scaffold_400_20
RIFOXYD12_FULL_Ignavibacteria_36_8_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(26289..26723)
DNA (435bp) protein (145aa)
Putative transcriptional regulator id=7719082 bin=BACIGN_2 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=BACIGN_2 organism_group=Unknown_CP
Putative transcriptional regulator
Tax=RIFOXYD12_FULL_Ignavibacteria_36_8_curated
SCNpilot_expt_500_p_scaffold_400_21
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

comp(26784..27911)
DNA (1128bp) protein (376aa)
cell cycle protein; K03588 cell division protein FtsW id=7719081 bin=BACIGN_2 species=Prosthecochloris vibrioformis genus=Prosthecochloris taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=BACIGN_2 organism_group=Unknown_CP rbh
cell cycle protein; K03588 cell division protein FtsW rbh
Tax=BJP_IG2069_Ignavibacteriae_38_11
SCNpilot_expt_500_p_scaffold_400_22
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(27908..29152)
DNA (1245bp) protein (415aa)
Signal transduction histidine kinase id=7719080 bin=BACIGN_2 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=BACIGN_2 organism_group=Unknown_CP rbh
Signal transduction histidine kinase rbh
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_500_p_scaffold_400_23
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists


comp(29171..30421)
DNA (1251bp) protein (417aa)
Histidine--tRNA ligase (EC:6.1.1.21); K01892 histidyl-tRNA synthetase [EC:6.1.1.21] id=7719079 bin=BACIGN_2 species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=BACIGN_2 organism_group=Unknown_CP rbh
Histidine--tRNA ligase (EC:6.1.1.21); K01892 histidyl-tRNA synthetase [EC:6.1.1.21]
Tax=BJP_IG2069_Ignavibacteriae_38_11
SCNpilot_expt_500_p_scaffold_400_24
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

comp(30423..30893)
DNA (471bp) protein (157aa)
ptsN; Ntr-type phosphotransferase system IIA domain protein; K02806 PTS system, nitrogen regulatory IIA component [EC:2.7.1.69] id=7719078 bin=BACIGN_2 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=BACIGN_2 organism_group=Unknown_CP
ptsN; Ntr-type phosphotransferase system IIA domain protein; K02806 PTS system, nitrogen regulatory IIA component [EC:2.7.1.69]
Tax=BJP_IG2069_Ignavibacteriae_38_11
SCNpilot_expt_500_p_scaffold_400_25
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(30895..33390)
DNA (2496bp) protein (832aa)
nucleotidyl transferase; K00966 mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]; K01840 phosphomannomutase [EC:5.4.2.8] id=7719077 bin=BACIGN_2 species=Chloroherpeton thalassium genus=Chloroherpeton taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=BACIGN_2 organism_group=Unknown_CP rbh
nucleotidyl transferase; K00966 mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]; K01840 phosphomannomutase [EC:5.4.2.8] rbh
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_500_p_scaffold_400_26
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(33481..35514)
DNA (2034bp) protein (678aa)
acetyl-CoA synthetase; K01895 acetyl-CoA synthetase [EC:6.2.1.1] id=7719076 bin=BACIGN_2 species=unknown genus=Chlorobaculum taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=BACIGN_2 organism_group=Unknown_CP rbh
Acetyl-coenzyme A synthetase {ECO:0000256|HAMAP-Rule:MF_01123}; Short=AcCoA synthetase {ECO:0000256|HAMAP-Rule:MF_01123};; Short=Acs {ECO:0000256|HAMAP-Rule:MF_01123};; EC=6.2.1.1 {ECO:0000256|HAMAP-Rule:MF_01123};; Acetate--CoA ligase {ECO:0000256|HAMAP-Rule:MF_01123}; Acyl-activating enzyme {ECO:0000256|HAMAP-Rule:MF_01123}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
acetyl-CoA synthetase; K01895 acetyl-CoA synthetase [EC:6.2.1.1] rbh
SCNpilot_expt_500_p_scaffold_400_27
Geofilum rubicundum, Geofilum, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(35511..36053)
DNA (543bp) protein (181aa)
isochorismatase hydrolase id=7719075 bin=BACIGN_2 species=Marinilabilia salmonicolor genus=Marinilabilia taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
Isochorismatase {ECO:0000313|EMBL:GAO30549.1}; TaxID=1236989 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Geofilum.;" source="Geofilum rubicundum JCM 15548.;"
isochorismatase hydrolase
SCNpilot_expt_500_p_scaffold_400_28
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

comp(36107..36988)
DNA (882bp) protein (294aa)
hypothetical protein id=7719074 bin=BACIGN_2 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=BACIGN_2 organism_group=Unknown_CP rbh
hypothetical protein
Tax=BJP_IG2069_Ignavibacteriae_38_11
SCNpilot_expt_500_p_scaffold_400_29
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(37008..38126)
DNA (1119bp) protein (373aa)
group 1 glycosyl transferase id=7719073 bin=BACIGN_2 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
group 1 glycosyl transferase
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_500_p_scaffold_400_30
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(38126..39100)
DNA (975bp) protein (325aa)
hypothetical protein id=7719072 bin=BACIGN_2 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=BACIGN_2 organism_group=Unknown_CP rbh
hypothetical protein rbh
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
Displaying items 1-30 of 46 in total

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