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SCNpilot_expt_500_p_scaffold_633

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_633_1
Leptospira weilii, Leptospira, Spirochaetia, Spirochaetes, Bacteria

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comp(1..633)
DNA (633bp) protein (211aa)
integrase catalytic region id=7717357 bin=BACIGN_2 species=Microvirga sp. WSM3557 genus=Microvirga taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=BACIGN_2 organism_group=Unknown_CP
Putative IS1236 transposase {ECO:0000313|EMBL:EMY79787.1}; TaxID=1218598 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira weilii serovar Ranarum str. ICFT.;"
transposase
SCNpilot_expt_500_p_scaffold_633_2
unknown

Not on your lists

comp(882..1106)
DNA (225bp) protein (75aa)
Transposase id=7718540 bin=BACIGN_2 species=Desulfitobacterium hafniense genus=Desulfitobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=BACIGN_2 organism_group=Unknown_CP
SCNpilot_expt_500_p_scaffold_633_3
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

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1477..3654
DNA (2178bp) protein (726aa)
hypothetical protein id=7718121 bin=BACIGN_2 species=Salinibacter ruber genus=Salinibacter taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
hypothetical protein rbh
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_500_p_scaffold_633_4
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

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3654..4289
DNA (636bp) protein (212aa)
DNA-(Apurinic or apyrimidinic site) lyase; K03653 N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] id=7718120 bin=BACIGN_2 species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=BACIGN_2 organism_group=Unknown_CP rbh
DNA-(Apurinic or apyrimidinic site) lyase; K03653 N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
Tax=BJP_IG2069_Ignavibacteriae_38_11
SCNpilot_expt_500_p_scaffold_633_5
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

4484..5896
DNA (1413bp) protein (471aa)
Outer membrane protein OprF id=7718119 bin=BACIGN_2 species=uncultured Bacteroidetes bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
BatA; K07114 uncharacterized protein
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_500_p_scaffold_633_6
uncultured Bacteroidetes bacterium, Bacteroidetes, Bacteria

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comp(5883..6290)
DNA (408bp) protein (136aa)
hypothetical protein id=7718118 bin=BACIGN_2 species=uncultured Bacteroidetes bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP
Thioesterase superfamily protein {ECO:0000313|EMBL:BAL53583.1}; TaxID=152509 species="Bacteria; Bacteroidetes; environmental samples.;" source="uncultured Bacteroidetes bacterium.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_633_7
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

6409..7794
DNA (1386bp) protein (462aa)
2-Methylthioadenine synthetase id=7718117 bin=BACIGN_2 species=uncultured Bacteroidetes bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
2-Methylthioadenine synthetase
Tax=BJP_IG2069_Ignavibacteriae_38_11
SCNpilot_expt_500_p_scaffold_633_8
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

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7791..8651
DNA (861bp) protein (287aa)
peptidase M55 D-aminopeptidase; K02035 peptide/nickel transport system substrate-binding protein id=7718116 bin=BACIGN_2 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=BACIGN_2 organism_group=Unknown_CP rbh
peptidase M55 D-aminopeptidase; K02035 peptide/nickel transport system substrate-binding protein
Peptidase M55 D-aminopeptidase {ECO:0000313|EMBL:ACZ39460.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
SCNpilot_expt_500_p_scaffold_633_9
Cellulophaga algicola, Cellulophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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8678..12865
DNA (4188bp) protein (1396aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=688270 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Cellulophaga.;" source="Cellulophaga algicola (strain DSM 14237 / IC166 / ACAM 630).;"
pas/pac sensor signal transduction histidine kinase id=7718115 bin=BACIGN_2 species=Cellulophaga algicola genus=Cellulophaga taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
pas/pac sensor signal transduction histidine kinase rbh
SCNpilot_expt_500_p_scaffold_633_10
Flavobacterium sp. CF136, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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12919..14790
DNA (1872bp) protein (624aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=1144313 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. CF136.;"
multi-sensor signal transduction histidine kinase id=7718114 bin=BACIGN_2 species=Flavobacterium sp. CF136 genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
multi-sensor signal transduction histidine kinase
SCNpilot_expt_500_p_scaffold_633_11
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

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14795..15202
DNA (408bp) protein (136aa)
response regulator receiver protein id=7718113 bin=BACIGN_2 species=Flavobacterium sp. F52 genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP
response regulator receiver protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_500_p_scaffold_633_12
uncultured Bacteroidetes bacterium, Bacteroidetes, Bacteria

Not on your lists

comp(15533..16345)
DNA (813bp) protein (271aa)
peptidase M48 Ste24p id=7718112 bin=BACIGN_2 species=uncultured Bacteroidetes bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
Zinc dependent protease/lipoprotein {ECO:0000313|EMBL:BAL53580.1}; TaxID=152509 species="Bacteria; Bacteroidetes; environmental samples.;" source="uncultured Bacteroidetes bacterium.;"
peptidase, M48 family
SCNpilot_expt_500_p_scaffold_633_13
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(16361..17134)
DNA (774bp) protein (258aa)
tRNA pseudouridine synthase A; K06173 tRNA pseudouridine38-40 synthase [EC:5.4.99.12] id=7718111 bin=BACIGN_2 species=uncultured Bacteroidetes bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
tRNA pseudouridine synthase A; K06173 tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_500_p_scaffold_633_14
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

17394..18818
DNA (1425bp) protein (475aa)
hypothetical protein id=7718110 bin=BACIGN_2 species=Myxococcus sp. (contaminant ex DSM 436) genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=BACIGN_2 organism_group=Unknown_CP rbh
hypothetical protein
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_500_p_scaffold_633_15
RIFOXYC2_FULL_Ignavibacteria_38_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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comp(18844..19422)
DNA (579bp) protein (193aa)
beta-glucosidase-related glycosidases and D-alanyl-D-alanine dipeptidase; K01207 beta-N-acetylhexosaminidase [EC:3.2.1.52] id=7718109 bin=BACIGN_2 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
beta-glucosidase-related glycosidases and D-alanyl-D-alanine dipeptidase; K01207 beta-N-acetylhexosaminidase [EC:3.2.1.52]
Tax=RIFOXYC2_FULL_Ignavibacteria_38_25_curated
SCNpilot_expt_500_p_scaffold_633_16
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(19588..21045)
DNA (1458bp) protein (486aa)
OmpA/MotB domain-containing protein id=7718108 bin=BACIGN_2 species=Cesiribacter andamanensis genus=Cesiribacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
OmpA/MotB domain protein
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_500_p_scaffold_633_17
unknown

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comp(21060..22007)
DNA (948bp) protein (316aa)
id=7718107 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
SCNpilot_expt_500_p_scaffold_633_18
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(22066..23535)
DNA (1470bp) protein (490aa)
aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] id=7718106 bin=BACIGN_2 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] rbh
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_500_p_scaffold_633_19
Saccharomonospora cyanea, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(23657..24184)
DNA (528bp) protein (176aa)
methyltransferase type 11 id=7718105 bin=BACIGN_2 species=Saccharomonospora cyanea genus=Saccharomonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=BACIGN_2 organism_group=Unknown_CP rbh
Methyltransferase family protein {ECO:0000313|EMBL:EHR61901.1}; TaxID=882082 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora cyanea NA-134.;"
methyltransferase type 11
SCNpilot_expt_500_p_scaffold_633_20
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(24263..24811)
DNA (549bp) protein (183aa)
peptide deformylase (EC:3.5.1.88); K01462 peptide deformylase [EC:3.5.1.88] id=7718104 bin=BACIGN_2 species=Marivirga tractuosa genus=Marivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
peptide deformylase (EC:3.5.1.88); K01462 peptide deformylase [EC:3.5.1.88]
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_500_p_scaffold_633_21
CG_Ignavi_02, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(24815..25498)
DNA (684bp) protein (228aa)
L-2-haloalkanoic acid dehalogenase; K07025 putative hydrolase of the HAD superfamily id=7718103 bin=BACIGN_2 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=BACIGN_2 organism_group=Unknown_CP rbh
L-2-haloalkanoic acid dehalogenase; K07025 putative hydrolase of the HAD superfamily
Tax=CG_Ignavi_02
SCNpilot_expt_500_p_scaffold_633_22
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

25514..26038
DNA (525bp) protein (175aa)
hypothetical protein; K09117 hypothetical protein id=7718102 bin=BACIGN_2 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=BACIGN_2 organism_group=Unknown_CP
hypothetical protein; K09117 hypothetical protein
Tax=BJP_IG2069_Ignavibacteriae_38_11
SCNpilot_expt_500_p_scaffold_633_23
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

26035..28398
DNA (2364bp) protein (788aa)
MutS2 family protein; K07456 DNA mismatch repair protein MutS2 id=7718101 bin=BACIGN_2 species=Chloroherpeton thalassium genus=Chloroherpeton taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=BACIGN_2 organism_group=Unknown_CP rbh
MutS2 family protein; K07456 DNA mismatch repair protein MutS2 rbh
Tax=BJP_IG2069_Ignavibacteriae_38_11
SCNpilot_expt_500_p_scaffold_633_24
Indibacter alkaliphilus, Indibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

28456..29904
DNA (1449bp) protein (483aa)
carbamoyl-phosphate synthase L chain ATP-binding; K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] id=7718100 bin=BACIGN_2 species=Indibacter alkaliphilus genus=Indibacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
Methylcrotonyl-CoA carboxylase biotin-containing subunit {ECO:0000313|EMBL:EOZ95706.1}; EC=6.4.1.4 {ECO:0000313|EMBL:EOZ95706.1};; TaxID=1189612 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae.;" source="Indibacter alkaliphilus LW1.;"
carbamoyl-phosphate synthase L chain ATP-binding; K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
SCNpilot_expt_500_p_scaffold_633_25
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

29914..32151
DNA (2238bp) protein (746aa)
purL; Phosphoribosylformylglycinamidine synthase; K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] id=7718099 bin=BACIGN_2 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=BACIGN_2 organism_group=Unknown_CP rbh
purL; Phosphoribosylformylglycinamidine synthase; K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] rbh
Tax=BJP_IG2069_Ignavibacteriae_38_11
SCNpilot_expt_500_p_scaffold_633_26
RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated, Bacteroidetes, Bacteria

Not on your lists

32148..32687
DNA (540bp) protein (180aa)
hypothetical protein id=7718098 bin=BACIGN_2 species=Pontibacter sp. BAB1700 genus=Pontibacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated
SCNpilot_expt_500_p_scaffold_633_27
Chlorobium sp. GBChlB, Chlorobium, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

32689..33141
DNA (453bp) protein (151aa)
hypothetical protein; K15977 putative oxidoreductase id=7718097 bin=BACIGN_2 species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=BACIGN_2 organism_group=Unknown_CP rbh
Uncharacterized protein {ECO:0000313|EMBL:KER10501.1}; TaxID=1519464 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium.;" source="Chlorobium sp. GBChlB.;"
hypothetical protein; K15977 putative oxidoreductase
SCNpilot_expt_500_p_scaffold_633_28
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

comp(33104..34306)
DNA (1203bp) protein (401aa)
permease id=7718096 bin=BACIGN_2 species=Salinibacter ruber genus=Salinibacter taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
permease
Tax=BJP_IG2069_Ignavibacteriae_38_11
SCNpilot_expt_500_p_scaffold_633_29
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(34306..35151)
DNA (846bp) protein (282aa)
3-hydroxyacyl-CoA dehydrogenase nad-binding protein; K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] id=7718095 bin=BACIGN_2 species=Fulvivirga imtechensis genus=Fulvivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
3-hydroxyacyl-CoA dehydrogenase nad-binding protein; K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
3-hydroxybutyryl-CoA dehydrogenase {ECO:0000313|EMBL:ELR70990.1}; TaxID=1237149 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imtechensis AK7.;"
SCNpilot_expt_500_p_scaffold_633_30
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35148..35993)
DNA (846bp) protein (282aa)
2-amino-3-ketobutyrate coenzyme A ligase (EC:2.3.1.29); K00639 glycine C-acetyltransferase [EC:2.3.1.29] id=7718094 bin=BACIGN_2 species=Joostella marina genus=Joostella taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP
2-amino-3-ketobutyrate coenzyme A ligase {ECO:0000256|HAMAP-Rule:MF_00985}; Short=AKB ligase {ECO:0000256|HAMAP-Rule:MF_00985};; EC=2.3.1.29 {ECO:0000256|HAMAP-Rule:MF_00985};; Glycine acetyltransferase {ECO:0000256|HAMAP-Rule:MF_00985}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
2-amino-3-ketobutyrate coenzyme A ligase
Displaying 30 items

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