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SCNpilot_expt_500_p_scaffold_1958

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_1958_1
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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2..2092
DNA (2091bp) protein (697aa)
acriflavin resistance protein n=1 Tax=Rudanella lutea RepID=UPI0003633DB0
Acriflavin resistance protein {ECO:0000313|EMBL:AKD54823.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
acriflavin resistance protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
SCNpilot_expt_500_p_scaffold_1958_2
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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2160..2849
DNA (690bp) protein (230aa)
silent information regulator protein Sir2; K12410 NAD-dependent deacetylase [EC:3.5.1.-]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000381C019
Silent information regulator protein Sir2 {ECO:0000313|EMBL:ACU62877.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_p_scaffold_1958_3
Bizionia argentinensis, Bizionia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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3203..4357
DNA (1155bp) protein (385aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI000365FB5C
Uncharacterized protein {ECO:0000313|EMBL:EGV44538.1}; TaxID=1046627 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Bizionia.;" source="Bizionia argentinensis JUB59.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_1958_4
Algibacter lectus, Algibacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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4410..5417
DNA (1008bp) protein (336aa)
hypothetical protein n=1 Tax=Leucothrix mucor RepID=UPI0003B4461A rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:GAL62873.1}; TaxID=221126 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Algibacter.;" source="Algibacter lectus.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_1958_5
Rhodonellum psychrophilum, Rhodonellum, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(5420..6877)
DNA (1458bp) protein (486aa)
Uncharacterized protein n=1 Tax=Rhodonellum psychrophilum GCM71 = DSM 17998 RepID=U5BUJ6_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:ERM84300.1}; TaxID=1123057 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Rhodonellum.;" source="Rhodonellum psychrophilum GCM71 = DSM 17998.;"
BCCT transporter; K05020 glycine betaine transporter rbh
SCNpilot_expt_500_p_scaffold_1958_6
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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7132..9228
DNA (2097bp) protein (699aa)
PKD domain containing protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IJM8_FLUTR
PKD domain-containing protein
PKD domain containing protein {ECO:0000313|EMBL:AEA43918.1}; Flags: Precursor;; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
SCNpilot_expt_500_p_scaffold_1958_7
GWD2_Bacteroidetes_33_33_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(9542..11857)
DNA (2316bp) protein (772aa)
Putative TonB-dependent outer membrane receptor protein id=1788132 bin=GWD2_Bacteroidetes_33_33 species=Flavobacteria bacterium BAL38 genus=unknown taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_33_33 organism_group=Bacteroidetes organism_desc=a152
TonB-dependent receptor
Tax=GWD2_Bacteroidetes_33_33_curated
SCNpilot_expt_500_p_scaffold_1958_8
GWE2_Bacteroidetes_32_14_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(11868..12221)
DNA (354bp) protein (118aa)
hypothetical protein MsalJ2_16964 id=2183365 bin=GWE2_Bacteroidetes_32_14 species=Marinilabilia salmonicolor genus=Marinilabilia taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_32_14 organism_group=Bacteroidetes organism_desc=Good +
copper chaperone
Tax=GWE2_Bacteroidetes_32_14_curated
SCNpilot_expt_500_p_scaffold_1958_9
unknown

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comp(12284..12694)
DNA (411bp) protein (137aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_1958_10
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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12866..13750
DNA (885bp) protein (295aa)
RluA family pseudouridine synthase; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Pseudouridine synthase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PB35_CHIPD
Displaying 10 items

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