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SCNpilot_expt_500_p_scaffold_110

Search features with annotation key words

Displaying items 1-30 of 115 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_110_1
GWF2_Tenericutes_57_13_curated, Tenericutes, Bacteria

Not on your lists

comp(2..1684)
DNA (1683bp) protein (561aa)
Ig domain protein group 2 domain protein id=4318445 bin=GWF2_Firmicute_57_13 species=Sphaerochaeta globosa genus=Sphaerochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF2_Firmicute_57_13 organism_group=Firmicute
cell wall/surface repeat-containing protein
Tax=GWF2_Tenericutes_57_13_curated
SCNpilot_expt_500_p_scaffold_110_2
Myroides odoratus, Myroides, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1945..3036)
DNA (1092bp) protein (364aa)
Ig domain protein group 2 domain protein n=2 Tax=Myroides RepID=H1Z662_MYROD
Ig domain protein group 2 domain protein {ECO:0000313|EMBL:EHQ43555.1}; Flags: Precursor;; TaxID=929704 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Myroides.;" source="Myroides odoratus DSM 2801.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_110_3
GWF2_Tenericutes_57_13_curated, Tenericutes, Bacteria

Not on your lists

comp(3457..5091)
DNA (1635bp) protein (545aa)
Ig domain protein group 2 domain protein n=1 Tax=Sphaerochaeta globosa (strain ATCC BAA-1886 / DSM 22777 / Buddy) RepID=F0RUU1_SPHGB
hypothetical protein
Tax=GWF2_Tenericutes_57_13_curated
SCNpilot_expt_500_p_scaffold_110_4
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5173..6261)
DNA (1089bp) protein (363aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PT24_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU59063.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_p_scaffold_110_5
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6258..7835)
DNA (1578bp) protein (526aa)
Twin-arginine translocation pathway signal n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PT25_CHIPD rbh
twin-arginine translocation pathway signal rbh
Twin-arginine translocation pathway signal {ECO:0000313|EMBL:ACU59064.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_p_scaffold_110_6
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7867..9402)
DNA (1536bp) protein (512aa)
spermidine synthase; K00797 spermidine synthase [EC:2.5.1.16]
Spermidine synthase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PT26_CHIPD
Polyamine aminopropyltransferase {ECO:0000256|HAMAP-Rule:MF_00198}; Putrescine aminopropyltransferase {ECO:0000256|HAMAP-Rule:MF_00198}; Spermidine synthase {ECO:0000256|HAMAP-Rule:MF_00198}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_p_scaffold_110_7
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9395..9601)
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PT27_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU59066.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_p_scaffold_110_8
unknown

Not on your lists

comp(9621..9803)
DNA (183bp) protein (61aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_110_9
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9820..11706)
DNA (1887bp) protein (629aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PT29_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU59068.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_p_scaffold_110_10
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11712..12071)
DNA (360bp) protein (120aa)
S-adenosylmethionine decarboxylase; K01611 S-adenosylmethionine decarboxylase [EC:4.1.1.50]
Adenosylmethionine decarboxylase {ECO:0000256|SAAS:SAAS00093036}; EC=4.1.1.50 {ECO:0000256|SAAS:SAAS00093036};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
S-adenosylmethionine decarboxylase related n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PT30_CHIPD
SCNpilot_expt_500_p_scaffold_110_11

Not on your lists

comp(12127..12363)
DNA (237bp) protein (79aa)
Transcriptional coactivator/pterin dehydratase (PCBD, phhB) {ECO:0000313|EMBL:AIF06395.1}; EC=4.2.1.96 {ECO:0000313|EMBL:AIF06395.1};; TaxID=1457962 species="Archaea; Euryarchaeota; environmental samples.;" source="uncultured marine group II/III euryarchaeote KM3_191_F05.;"
Pterin-4a-carbinolamine dehydratase (EC:4.2.1.96); K01724 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
Pterin-4a-carbinolamine dehydratase n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHX3_CHLTF
SCNpilot_expt_500_p_scaffold_110_12
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12374..13123)
DNA (750bp) protein (250aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5IV54_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK03104.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
LytTR family two component transcriptional regulator; K02477 two-component system, LytT family, response regulator
SCNpilot_expt_500_p_scaffold_110_13
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13104..15011)
DNA (1908bp) protein (636aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5IV53_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK03103.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
signal transduction histidine kinase
SCNpilot_expt_500_p_scaffold_110_14
Flavobacterium reichenbachii, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

15158..16108
DNA (951bp) protein (317aa)
Uncharacterized protein n=1 Tax=Capnocytophaga sp. oral taxon 863 str. F0517 RepID=U2AVM3_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KFF07579.1}; TaxID=362418 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium reichenbachii.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_110_15
unknown

Not on your lists

comp(16010..16201)
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_110_16
Flavobacterium suncheonense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

16207..17382
DNA (1176bp) protein (392aa)
Uncharacterized protein n=1 Tax=Flavobacterium cauense R2A-7 RepID=V6S0T3_9FLAO
von Willebrand factor type A {ECO:0000313|EMBL:KGO89227.1}; TaxID=1121899 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium suncheonense GH29-5 = DSM 17707.;"
von Willebrand factor type A-like protein
SCNpilot_expt_500_p_scaffold_110_17
Formosa sp. AK20, Formosa, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17529..18308)
DNA (780bp) protein (260aa)
Glycosyltransferase n=1 Tax=Formosa sp. AK20 RepID=M7ML69_9FLAO
Glycosyltransferase {ECO:0000313|EMBL:EMQ95640.1}; TaxID=1137281 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Formosa.;" source="Formosa sp. AK20.;"
putative methyltransferase
SCNpilot_expt_500_p_scaffold_110_18
Elizabethkingia anophelis, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

18743..20254
DNA (1512bp) protein (504aa)
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase n=3 Tax=Elizabethkingia RepID=H0KSY6_9FLAO rbh
Carbon-nitrogen hydrolase {ECO:0000313|EMBL:AIL46232.1}; TaxID=1338011 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia anophelis NUHP1.;"
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase rbh
SCNpilot_expt_500_p_scaffold_110_19
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

20300..21079
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G595_9SPHI rbh
Uncharacterized protein {ECO:0000313|EMBL:EEI89604.1}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
PEP phosphonomutase-like enzyme
SCNpilot_expt_500_p_scaffold_110_20
GWA2_Bacteroidetes_30_7_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21155..22852)
DNA (1698bp) protein (566aa)
PKD id=3877939 bin=GWF2_Bacteroidetes_38_335 species=Methanoplanus limicola genus=Methanoplanus taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
hypothetical protein
Tax=GWA2_Bacteroidetes_30_7_curated
SCNpilot_expt_500_p_scaffold_110_21
unknown

Not on your lists

comp(23024..24280)
DNA (1257bp) protein (419aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_110_22
unknown

Not on your lists

comp(24246..25166)
DNA (921bp) protein (307aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_110_23
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25150..25692)
DNA (543bp) protein (181aa)
RNA polymerase sigma-70 factor n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XW61_PEDHD
RNA polymerase sigma-70 factor
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:ACU04140.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
SCNpilot_expt_500_p_scaffold_110_24
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26245..26865
DNA (621bp) protein (207aa)
Putative uncharacterized protein id=4482165 bin=GWF2_Bacteroidetes_40_13 species=Marivirga tractuosa genus=Marivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_40_13 organism_group=Bacteroidetes
hypothetical protein
Tax=GWE2_Bacteroidetes_40_63_curated
SCNpilot_expt_500_p_scaffold_110_25
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26862..28259
DNA (1398bp) protein (466aa)
transcriptional regulator; K03655 ATP-dependent DNA helicase RecG [EC:3.6.4.12]
Putative transcriptional regulator id=3827468 bin=GWC2_Bacteroidetes_40_13 species=Marivirga tractuosa genus=Marivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_40_13 organism_group=Bacteroidetes rbh
Tax=GWE2_Bacteroidetes_40_63_curated
SCNpilot_expt_500_p_scaffold_110_26
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

28663..29445
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037BB54B
Uncharacterized protein {ECO:0000313|EMBL:KIC93231.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
alpha/beta hydrolase
SCNpilot_expt_500_p_scaffold_110_27
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

29451..31484
DNA (2034bp) protein (678aa)
UvrABC system protein B n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PH61_CHIPD
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
excinuclease ABC subunit B; K03702 excinuclease ABC subunit B
SCNpilot_expt_500_p_scaffold_110_28
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(31640..32440)
DNA (801bp) protein (267aa)
TonB-dependent receptor n=1 Tax=Thermophagus xiamenensis RepID=UPI000255D89F
TonB-dependent outer membrane protein, SusC/RagA {ECO:0000313|EMBL:AHG92978.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
outer membrane receptor protein
SCNpilot_expt_500_p_scaffold_110_29
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(32679..33854)
DNA (1176bp) protein (392aa)
TonB-dependent receptor plug n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VYT6_DYAFD
TonB-dependent receptor plug
TonB-dependent receptor plug {ECO:0000313|EMBL:ACT93441.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_expt_500_p_scaffold_110_30
RIFCSPLOWO2_12_FULL_Flavobacteria_31_7_curated, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(33838..34392)
DNA (555bp) protein (185aa)
RNA polymerase ECF-type sigma factor n=1 Tax=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) RepID=R7RV83_FLAPJ
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
Tax=RIFCSPLOWO2_12_FULL_Flavobacteria_31_7_curated
Displaying items 1-30 of 115 in total

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