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SCNpilot_expt_500_p_scaffold_866

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_866_1
unknown

Not on your lists

comp(123..446)
DNA (324bp) protein (108aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_866_2
Peptococcaceae bacterium BRH_c23, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

659..1198
DNA (540bp) protein (180aa)
dTDP-4-dehydrorhamnose 3,5-epimerase (EC:5.1.3.13); K01790 dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
hypothetical protein n=1 Tax=Geminocystis herdmanii RepID=UPI0003466D8C
dTDP-4-dehydrorhamnose 3,5-epimerase {ECO:0000313|EMBL:KJS49038.1}; TaxID=1629714 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c23.;"
SCNpilot_expt_500_p_scaffold_866_3
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1217..1675
DNA (459bp) protein (153aa)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00151}; Pantetheine-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
Phosphopantetheine adenylyltransferase; K00954 pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
phosphopantetheine adenylyltransferase n=1 Tax=Niabella aurantiaca RepID=UPI00037D157D
SCNpilot_expt_500_p_scaffold_866_4
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1742..2086
DNA (345bp) protein (115aa)
Preprotein translocase, YajC subunit n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TGG1_NIAKG
preprotein translocase subunit YajC; K03210 preprotein translocase subunit YajC
Preprotein translocase, YajC subunit {ECO:0000313|EMBL:AEV97384.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_500_p_scaffold_866_5
unknown

Not on your lists

comp(2144..2569)
DNA (426bp) protein (142aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_866_6
Alistipes sp. CAG:831, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2635..3003)
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Alistipes sp. CAG:831 RepID=R5IHQ5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CCY36437.1}; TaxID=1262698 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:831.;"
SCNpilot_expt_500_p_scaffold_866_7
unknown

Not on your lists

comp(3078..3275)
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_866_8
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3441..4469
DNA (1029bp) protein (343aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NR22_9SPHI rbh
Membrane protein {ECO:0000313|EMBL:AHF16511.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_866_9
CG_Bacteroid_01, Bacteroidetes, Bacteria

Not on your lists

4444..5448
DNA (1005bp) protein (335aa)
BNR repeat-containing glycosyl hydrolase
Putative uncharacterized protein id=3263673 bin=GWF2_Bacteroidetes_35_48 species=Chryseobacterium gleum genus=Chryseobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_35_48 organism_group=Bacteroidetes organism_desc=a81
Tax=CG_Bacteroid_01
SCNpilot_expt_500_p_scaffold_866_10
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5517..7364
DNA (1848bp) protein (616aa)
DNA mismatch repair protein MutL n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PJX8_CHIPD
DNA mismatch repair protein MutL; K03572 DNA mismatch repair protein MutL
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_p_scaffold_866_11
Nematostella vectensis, Nematostella, Actiniaria, Hexacorallia, Cnidaria, Metazoa

Not on your lists

7601..8443
DNA (843bp) protein (281aa)
Predicted protein n=1 Tax=Nematostella vectensis RepID=A8DVL2_NEMVE rbh
hypothetical protein rbh
Predicted protein {ECO:0000313|EMBL:EDO25747.1}; TaxID=45351 species="Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella.;" source="Nematostella vectensis (Starlet sea anemone).;"
SCNpilot_expt_500_p_scaffold_866_12
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8516..9181
DNA (666bp) protein (222aa)
Biopolymertransporter ExbD/TolR n=1 Tax=Pontibacter sp. BAB1700 RepID=J1FI96_9BACT id=720856 bin=RAAC39 species=Pontibacter sp. BAB1700 genus=Pontibacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=RAAC39 organism_group=Ignavibacteria
biopolymer transport protein ExbD/TolR
Biopolymer transport protein ExbD/TolR {ECO:0000313|EMBL:ACU58924.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_p_scaffold_866_13
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9228..9779
DNA (552bp) protein (184aa)
Biopolymer transport protein ExbD/TolR n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PRN2_CHIPD
biopolymer transport protein ExbD/TolR
Biopolymer transport protein ExbD/TolR {ECO:0000313|EMBL:ACU58925.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_p_scaffold_866_14
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9813..10658
DNA (846bp) protein (282aa)
TonB family protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PRN3_CHIPD
TonB family protein; K03832 periplasmic protein TonB
TonB family protein {ECO:0000313|EMBL:ACU58926.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_p_scaffold_866_15
unknown

Not on your lists

comp(10749..11549)
DNA (801bp) protein (267aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_866_16
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11723..14053
DNA (2331bp) protein (777aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
polyribonucleotide nucleotidyltransferase; K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] rbh
Polyribonucleotide nucleotidyltransferase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PL11_CHIPD rbh
SCNpilot_expt_500_p_scaffold_866_17
Eikenella corrodens, Eikenella, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14266..14898)
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DSD7_EIKCO
Uncharacterized protein {ECO:0000313|EMBL:EEG25089.1}; TaxID=546274 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Eikenella.;" source="Eikenella corrodens ATCC 23834.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_866_18
Saprospira grandis, Saprospira, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14978..16015)
DNA (1038bp) protein (346aa)
Endonuclease/exonuclease/phosphatase family protein n=1 Tax=Saprospira grandis (strain Lewin) RepID=H6LAT6_SAPGL
endonuclease/exonuclease/phosphatase family protein
Endonuclease/exonuclease/phosphatase family protein {ECO:0000313|EMBL:AFC25679.1}; TaxID=984262 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Saprospira.;" source="Saprospira grandis (strain Lewin).;"
SCNpilot_expt_500_p_scaffold_866_19
unknown

Not on your lists

comp(16057..16161)
DNA (105bp) protein (35aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_866_20
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16238..17473
DNA (1236bp) protein (412aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PUD2_CHIPD
Uncharacterized protein {ECO:0000313|EMBL:KIC93434.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein; K09808 lipoprotein-releasing system permease protein
SCNpilot_expt_500_p_scaffold_866_21
RBG_13_Planctomycetes_44_8b_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

17477..18403
DNA (927bp) protein (309aa)
Tax=RBG_13_Planctomycetes_44_8b_curated
SCNpilot_expt_500_p_scaffold_866_22
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18420..18770
DNA (351bp) protein (117aa)
Translation initiation factor SUI1 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PFY6_CHIPD
translation initiation factor SUI1; K03113 translation initiation factor 1
Translation initiation factor SUI1 {ECO:0000313|EMBL:ACU57969.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_500_p_scaffold_866_23
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18773..19114
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NTX2_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF16161.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_866_24
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


19477..19821
DNA (345bp) protein (115aa)
50S ribosomal protein L20 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THU1_NIAKG
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
50S ribosomal protein L20P; K02887 large subunit ribosomal protein L20
SCNpilot_expt_500_p_scaffold_866_25
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


19888..20253
DNA (366bp) protein (122aa)
50S ribosomal protein L19 n=1 Tax=Niabella aurantiaca RepID=UPI00037D12BE
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
50S ribosomal protein L19; K02884 large subunit ribosomal protein L19
SCNpilot_expt_500_p_scaffold_866_26
GWA2_Bacteroidetes_32_17_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20524..24462
DNA (3939bp) protein (1313aa)
Putative uncharacterized protein id=4603902 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes rbh
hypothetical protein
Tax=GWA2_Bacteroidetes_32_17_curated
SCNpilot_expt_500_p_scaffold_866_27
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

24663..26093
DNA (1431bp) protein (477aa)
Uncharacterized protein {ECO:0000313|EMBL:KIC89217.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
Displaying 27 items

View Taxonomy